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    ankrd28b ankyrin repeat domain 28b [ Danio rerio (zebrafish) ]

    Gene ID: 560747, updated on 12-Sep-2024

    Summary

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    Official Symbol
    ankrd28bprovided by ZNC
    Official Full Name
    ankyrin repeat domain 28bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070622-4
    See related
    Ensembl:ENSDARG00000009023 AllianceGenome:ZFIN:ZDB-GENE-070622-4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ankrd28
    Summary
    Orthologous to human ANKRD28 (ankyrin repeat domain 28). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See ankrd28b in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (20055853..20152735)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (20249932..20346914)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene histone deacetylase 9b Neighboring gene aryl hydrocarbon receptor 1a Neighboring gene chromosome 16 C2orf66 homolog Neighboring gene 2-hydroxyacyl-CoA lyase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Interaction of infectious spleen and kidney necrosis virus ORF119L with PINCH leads to dominant-negative inhibition of integrin-linked kinase and cardiovascular defects in zebrafish. Yuan JM, et al. J Virol, 2015 Jan. PMID 25355883, Free PMC Article
    2. Many genes in fish have species-specific asymmetric rates of molecular evolution. Steinke D, et al. BMC Genomics, 2006 Feb 8. PMID 16466575, Free PMC Article
    3. The SARS-CoV-2 receptor and other key components of the Renin-Angiotensin-Aldosterone System related to COVID-19 are expressed in enterocytes in larval zebrafish. Postlethwait JH, et al. Biol Open, 2021 Mar 23. PMID 33757938, Free PMC Article
    4. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A
    Names
    ankyrin repeat domain 28

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      20055853..20152735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009292265.4 → XP_009290540.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A

      UniProtKB/TrEMBL
      A0A8M3B1M1, E9QBZ2, F1QEZ4
      Related
      ENSDARP00000020838.7, ENSDART00000027020.9
      Conserved Domains (6) summary
      cd00204
      Location:134 → 259
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam00023
      Location:42 → 72
      Ank; Ankyrin repeat
      pfam12796
      Location:177 → 269
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:686 → 735
      Ank_4; Ankyrin repeats (many copies)
      pfam13857
      Location:258 → 312
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:140 → 170
      ANK; ANK repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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