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    gpbp1l1 GC-rich promoter binding protein 1-like 1 [ Danio rerio (zebrafish) ]

    Gene ID: 799876, updated on 2-Nov-2024

    Summary

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    Official Symbol
    gpbp1l1provided by ZNC
    Official Full Name
    GC-rich promoter binding protein 1-like 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-031118-220
    See related
    Ensembl:ENSDARG00000075569 AllianceGenome:ZFIN:ZDB-GENE-031118-220
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc48e01; fc88g04; wu:fc48e01; wu:fc88g04; wu:fi81c05
    Summary
    Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within DNA-templated transcription and positive regulation of DNA-templated transcription. Predicted to be active in nucleus. Orthologous to human GPBP1L1 (GC-rich promoter binding protein 1 like 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See gpbp1l1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (33881432..33898114)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (33896720..33913271)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene microtubule associated serine/threonine kinase 2 Neighboring gene transmembrane protein 69 Neighboring gene coiled-coil domain containing 17 Neighboring gene coiled-coil domain containing 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    vasculin-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      33881432..33898114
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477183.2 → XP_021332858.1  vasculin-like protein 1

      UniProtKB/TrEMBL
      A0A0R4IH70, A0A8M9Q0P7
      Related
      ENSDARP00000134071.1, ENSDART00000165710.2
      Conserved Domains (2) summary
      pfam15337
      Location:389 → 459
      Vasculin; Vascular protein family Vasculin-like 1
      cl26464
      Location:174 → 321
      Atrophin-1; Atrophin-1 family

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395259.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      186175..202280
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001336035.9 → XP_001336071.2  vasculin-like protein 1

      UniProtKB/TrEMBL
      A0A8M1PS38
      Conserved Domains (2) summary
      pfam15337
      Location:389 → 459
      Vasculin; Vascular protein family Vasculin-like 1
      cl26464
      Location:174 → 321
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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