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    wu:fe17e08 wu:fe17e08 [ Danio rerio (zebrafish) ]

    Gene ID: 326789, updated on 2-Nov-2024

    Summary

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    Official Symbol
    wu:fe17e08provided by ZNC
    Official Full Name
    wu:fe17e08provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4988
    See related
    AllianceGenome:ZFIN:ZDB-GENE-030131-4988
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fe17e08
    Summary
    Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Nov 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    all
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    Genomic context

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    See wu:fe17e08 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (53368587..53373066)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (53278137..53281596)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene un-named sa911 Neighboring gene guanylate-binding protein 4 Neighboring gene guanylate-binding protein 1-like Neighboring gene protein unc-79 homolog Neighboring gene protein unc-79 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    oocyte zinc finger protein XlCOF6; uncharacterized protein LOC326789

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      53368587..53373066
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021467514.2 → XP_021323189.1  oocyte zinc finger protein XlCOF6

      UniProtKB/TrEMBL
      A0A8M9PF33
      Conserved Domains (2) summary
      COG5048
      Location:122 → 421
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:349 → 369
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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