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    ranbp9 RAN binding protein 9 [ Danio rerio (zebrafish) ]

    Gene ID: 558976, updated on 12-Sep-2024

    Summary

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    Official Symbol
    ranbp9provided by ZNC
    Official Full Name
    RAN binding protein 9provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-021030-5
    See related
    Ensembl:ENSDARG00000061048 AllianceGenome:ZFIN:ZDB-GENE-021030-5
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb457; zgc:158650
    Summary
    Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in adaxial cell; brain; olfactory placode; retina; and somite. Orthologous to human RANBP9 (RAN binding protein 9). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See ranbp9 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (31806660..31826911)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (31823442..31843693)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene reticulophagy regulator 1 Neighboring gene ring finger protein 182 Neighboring gene nucleolar protein 7 Neighboring gene ependymin related 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Mind Bomb-Binding Partner RanBP9 Plays a Contributory Role in Retinal Development. Yoo KW, et al. Mol Cells, 2017 Apr. PMID 28359144, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within retina development in camera-type eye IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ran-binding protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080571.2 → NP_001074040.1  ran-binding protein 9

      See identical proteins and their annotated locations for NP_001074040.1

      Status: PROVISIONAL

      Source sequence(s)
      BC129352
      UniProtKB/Swiss-Prot
      A1L252
      Related
      ENSDARP00000081043.4, ENSDART00000086608.6
      Conserved Domains (5) summary
      smart00667
      Location:246 → 277
      LisH; Lissencephaly type-1-like homology motif
      smart00668
      Location:285 → 341
      CTLH; C-terminal to LisH motif
      smart00757
      Location:484 → 581
      CRA; CT11-RanBPM
      pfam10607
      Location:285 → 576
      CLTH; CTLH/CRA C-terminal to LisH motif domain
      cd12909
      Location:71 → 213
      SPRY_RanBP9_10; SPRY domain in Ran binding proteins 9 and 10

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      31806660..31826911
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1L252.1 GenPept UniProtKB/Swiss-Prot:A1L252

    Gene LinkOut

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