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    zgc:193801 zgc:193801 [ Danio rerio (zebrafish) ]

    Gene ID: 564476, updated on 2-Nov-2024

    Summary

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    Official Symbol
    zgc:193801provided by ZNC
    Official Full Name
    zgc:193801provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081022-40
    See related
    Ensembl:ENSDARG00000076552 AllianceGenome:ZFIN:ZDB-GENE-081022-40
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See zgc:193801 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (16089036..16102468, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (15993059..16006511, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene LIM homeobox 5 Neighboring gene mitotic spindle organizing protein 2B Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene cytochrome b561 family, member A3b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC564476

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001130782.1 → NP_001124254.1  uncharacterized protein LOC564476

      See identical proteins and their annotated locations for NP_001124254.1

      Status: PREDICTED

      Source sequence(s)
      BC162565
      UniProtKB/TrEMBL
      B3DGY3
      Related
      ENSDARP00000102229.2, ENSDART00000113899.4
      Conserved Domains (1) summary
      cl21462
      Location:256 → 294
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      16089036..16102468 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005161191.5 → XP_005161248.1  uncharacterized protein LOC564476 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B8F0
      Conserved Domains (1) summary
      cl21462
      Location:252 → 290
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein Strain
    Heading Accession and Version

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