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    ccdc174 coiled-coil domain containing 174 [ Danio rerio (zebrafish) ]

    Gene ID: 541361, updated on 12-Sep-2024

    Summary

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    Official Symbol
    ccdc174provided by ZNC
    Official Full Name
    coiled-coil domain containing 174provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050320-54
    See related
    Ensembl:ENSDARG00000023858 AllianceGenome:ZFIN:ZDB-GENE-050320-54
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:113409
    Summary
    Predicted to be active in nucleus. Orthologous to human CCDC174 (coiled-coil domain containing 174). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See ccdc174 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (40429772..40435025, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (40432237..40437489, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 4 member 8 Neighboring gene si:dkey-28n18.7 Neighboring gene si:dkey-28n18.9 Neighboring gene TatD DNase domain containing 2 Neighboring gene ghrelin/obestatin prepropeptide

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 174

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013488.2 → NP_001013506.1  coiled-coil domain-containing protein 174

      See identical proteins and their annotated locations for NP_001013506.1

      Status: PROVISIONAL

      Source sequence(s)
      BC090454
      UniProtKB/TrEMBL
      A0A8N1TQ02, Q5BLG0
      Related
      ENSDARP00000030727.5, ENSDART00000031153.6
      Conserved Domains (1) summary
      pfam13300
      Location:218 → 292
      DUF4078; Domain of unknown function (DUF4078)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      40429772..40435025 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476864.2 → XP_021332539.1  coiled-coil domain-containing protein 174 isoform X1

      UniProtKB/TrEMBL
      A0A8M9Q641
      Conserved Domains (1) summary
      pfam13300
      Location:227 → 300
      DUF4078; Domain of unknown function (DUF4078)
    Nucleotide Protein Strain
    Heading Accession and Version

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