psmf1 proteasome inhibitor subunit 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: psmf1provided by ZNC
Official Full Name: proteasome inhibitor subunit 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040718-282
See related: Ensembl:ENSDARG00000022652 AllianceGenome:ZFIN:ZDB-GENE-040718-282
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:92785
Summary: Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in endoplasmic reticulum. Orthologous to human PSMF1 (proteasome inhibitor subunit 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (51796296..51811173, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (51796297..51811174, complement)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables endopeptidase inhibitor activity	IEA Inferred from Electronic Annotation more info
enables molecular_function	ND No biological Data available more info
enables proteasome binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within proteasome-mediated ubiquitin-dependent protein catabolic process	IEA Inferred from Electronic Annotation more info
involved_in ubiquitin-dependent protein catabolic process	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
part_of proteasome complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: proteasome inhibitor PI31 subunit

Names: proteasome (prosome, macropain) inhibitor subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001002547.2 → NP_001002547.2 proteasome inhibitor PI31 subunit

Status: VALIDATED

Source sequence(s)

BX001037, CD604800, EH484771

UniProtKB/TrEMBL

A0A0R4II16, A0A8M1N0P9

Related

ENSDARP00000133267.1, ENSDART00000161048.3

Conserved Domains (2) summary

pfam08577
Location:186 → 249

PI31_Prot_C; PI31 proteasome regulator

pfam11566
Location:11 → 139

PI31_Prot_N; PI31 proteasome regulator N-terminal