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    hdac9b histone deacetylase 9b [ Danio rerio (zebrafish) ]

    Gene ID: 393789, updated on 2-Nov-2024

    Summary

    Official Symbol
    hdac9bprovided by ZNC
    Official Full Name
    histone deacetylase 9bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040109-7
    See related
    Ensembl:ENSDARG00000056642 AllianceGenome:ZFIN:ZDB-GENE-040109-7
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    hdac9; zgc:73392
    Summary
    Predicted to enable histone deacetylase activity. Acts upstream of or within angiogenesis; lymph vessel development; and primitive erythrocyte differentiation. Predicted to be located in nucleus. Orthologous to human HDAC9 (histone deacetylase 9). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See hdac9b in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (19840605..19890318, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (20034574..20084936, complement)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137487894 Neighboring gene uncharacterized LOC137487895 Neighboring gene aryl hydrocarbon receptor 1a Neighboring gene ankyrin repeat domain 28b

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    histone deacetylase 9-B
    Names
    histone deacetylase 9
    NP_957110.2
    XP_005158021.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200816.2NP_957110.2  histone deacetylase 9-B

      See identical proteins and their annotated locations for NP_957110.2

      Status: PROVISIONAL

      Source sequence(s)
      BC059696
      UniProtKB/Swiss-Prot
      Q6PBI4, Q6TEP8
      Related
      ENSDARP00000073615.4, ENSDART00000079159.6
      Conserved Domains (1) summary
      cd10163
      Location:38127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      19840605..19890318 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005157964.4XP_005158021.1  histone deacetylase 9-B isoform X1

      UniProtKB/TrEMBL
      A0A8M2B4U1
      Conserved Domains (1) summary
      cd10163
      Location:68157
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase