wdr75 WD repeat domain 75 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: wdr75provided by ZNC
Official Full Name: WD repeat domain 75provided by ZNC
Primary source: ZFIN:ZDB-GENE-030616-5
See related: Ensembl:ENSDARG00000040730 AllianceGenome:ZFIN:ZDB-GENE-030616-5
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb990; flj12519; zgc:55748; wu:fb53f09; wu:fb96h05; si:dz73o4.1; SI:dZ46I22.2; si:by113d7.2; si:by68f21.1; si:by134g18.1; si:xx-113d7.2
Summary: Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; nervous system; and segmental plate. Orthologous to human WDR75 (WD repeat domain 75). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 9

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	9	NC_007120.7 (41120158..41153882, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	9	NC_007120.6 (41318371..41352095, complement)

Chromosome 9 - NC_007120.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

AI497447 (e-PCR)
- UniSTS:206344

fb96h05 (e-PCR)
- UniSTS:189121

fb53f09.x1 (e-PCR)
- UniSTS:190686

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in positive regulation of rRNA processing	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of transcription by RNA polymerase I	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within rRNA processing	IEA Inferred from Electronic Annotation more info
involved_in ribosomal small subunit biogenesis	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within ribosome biogenesis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in nucleolus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of small-subunit processome	ISS Inferred from Sequence or Structural Similarity more info

General protein information

Go to the top of the page Help

Preferred Names: WD repeat-containing protein 75

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200090.1 → NP_956384.1 WD repeat-containing protein 75

See identical proteins and their annotated locations for NP_956384.1

Status: PROVISIONAL

Source sequence(s)

BC045446

UniProtKB/Swiss-Prot

Q7ZVR1, Q7ZZ52, Q8AUI8, Q8AW19, Q8JFV9

Related

ENSDARP00000059666.5, ENSDART00000059667.7

Conserved Domains (3) summary

COG2319
Location:23 → 318

WD40; WD40 repeat [General function prediction only]

sd00039
Location:61 → 99

7WD40; WD40 repeat [structural motif]

cl02567
Location:25 → 318

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...