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    h3f3d H3 histone, family 3D [ Danio rerio (zebrafish) ]

    Gene ID: 394076, updated on 2-Nov-2024

    Summary

    Official Symbol
    h3f3dprovided by ZNC
    Official Full Name
    H3 histone, family 3Dprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1023
    See related
    Ensembl:ENSDARG00000045248 AllianceGenome:ZFIN:ZDB-GENE-040426-1023
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    His3.3B; zgc:56418
    Summary
    Is expressed in female organism. Orthologous to human H3-3A (H3.3 histone A) and H3-3B (H3.3 histone B). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See h3f3d in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (37688766..37693028)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (37800869..37805131)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and sterile alpha motif domain containing 3 Neighboring gene zgc:112185 Neighboring gene chromosome 24 C7orf50 homolog Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 4 Neighboring gene 2,4-dienoyl CoA reductase 2, peroxisomal

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_201101.1NP_957395.1  H3 histone, family 3D

      See identical proteins and their annotated locations for NP_957395.1

      Status: PROVISIONAL

      Source sequence(s)
      BC049017
      UniProtKB/Swiss-Prot
      A5PL96, Q6PI20, Q7ZV67
      UniProtKB/TrEMBL
      B2GSF5
      Related
      ENSDARP00000117879.1, ENSDART00000137017.2
      Conserved Domains (1) summary
      PTZ00018
      Location:1136
      PTZ00018; histone H3; Provisional

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      37688766..37693028
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)