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    yrs1 putative tyrosine--tRNA (Tyr) ligase Yrs1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539269, updated on 17-May-2024

    Summary

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    Gene symbol
    yrs1
    Gene description
    putative tyrosine--tRNA (Tyr) ligase Yrs1
    Primary source
    PomBase:SPCC1672.05c
    Locus tag
    SPCC1672.05c
    See related
    FungiDB:SPCC1672.05c; VEuPathDB:SPCC1672.05c
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See yrs1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_003421.2 (569877..571477, complement)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene putative histidinol-phosphatase Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene putative guanine deaminase Neighboring gene putative Cu chaperone Neighboring gene miscRNA Neighboring gene putative inositol hexakisphosphate kinase/inositol pyrophosphate synthase Neighboring gene putative U3 snoRNP-associated protein Utp21

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A non-transcriptional role for the glucocorticoid receptor in mediating the cell stress response. Ptushkina M, et al. Sci Rep, 2017 Sep 21. PMID 28935859, Free PMC Article
    2. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
    3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tyrosine-tRNA ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasmic translation NAS
    Non-traceable Author Statement
    more info
    		  
    involved_in tyrosyl-tRNA aminoacylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    putative tyrosine--tRNA (Tyr) ligase Yrs1
    NP_587876.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      569877..571477 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022868.2 → NP_587876.1  putative tyrosine--tRNA (Tyr) ligase Yrs1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_587876.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O14055
      Conserved Domains (2) summary
      COG0162
      Location:7 → 347
      TyrS; Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
      cl00015
      Location:6 → 338
      nt_trans; nucleotidyl transferase superfamily
    Nucleotide Protein
    Heading Accession and Version

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