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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001143682.2 → NP_001137154.1  calcium-binding and coiled-coil domain-containing protein 1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) omits an inframe coding exon and uses an alternate (in-frame) splice acceptor site, compared to variant 2. This results in a shorter protein (isoform 2).
- Source sequence(s)
-
AC076968, AK122773, BC003177, DB060684
- Consensus CDS
-
CCDS44908.1
- UniProtKB/TrEMBL
-
B3KS47
- Related
- ENSP00000397189.2, ENST00000430117.6
- Conserved Domains (3) summary
-
- pfam07888
Location:13 → 511
- CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like
- cl02193
Location:114 → 290
- VirB5_like; VirB5 protein family
- cl23720
Location:335 → 425
- RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
-
NM_020898.3 → NP_065949.1  calcium-binding and coiled-coil domain-containing protein 1 isoform 1
See identical proteins and their annotated locations for NP_065949.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer protein isoform (1).
- Source sequence(s)
-
AC076968, AK315578, AL136895, BC003177
- Consensus CDS
-
CCDS8864.1
- UniProtKB/Swiss-Prot
- B3KVA8, Q6FI59, Q71RC3, Q86WF8, Q96JU3, Q9H090, Q9P1Z2
- UniProtKB/TrEMBL
-
B3KS47
- Related
- ENSP00000449960.1, ENST00000550804.6
- Conserved Domains (2) summary
-
- pfam07888
Location:13 → 596
- CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like
- cl23720
Location:238 → 346
- RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
RNA
-
NR_026554.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) omits the second coding exon resulting in a frameshift and premature stop codon. The transcript is a candidate for nonsense-mediated decay (NMD) and is inferred to not encode a protein.
- Source sequence(s)
-
AC076968, AK296497, AL136895, BC003177