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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001040153.4 → NP_001035243.2 SLAIN motif-containing protein 1 isoform A
See identical proteins and their annotated locations for NP_001035243.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes isoform A.
- Source sequence(s)
-
AK294201, BC045177
- Consensus CDS
-
CCDS31995.2
- UniProtKB/TrEMBL
-
A0A0C4DFN6
- Related
- ENSP00000418707.1, ENST00000488699.5
- Conserved Domains (1) summary
-
- pfam15301
Location:46 → 426
- SLAIN; SLAIN motif-containing family
-
NM_001242868.2 → NP_001229797.1 SLAIN motif-containing protein 1 isoform C
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate 5' exon, and thus differs in the 5' UTR and 5' coding region, compared to variant 1. The encoded isoform (C) has a distinct and longer N-terminus, compared to isoform A.
- Source sequence(s)
-
AL354831, BC045177, BG391962, BQ433296, DB500463
- Consensus CDS
-
CCDS73588.1
- UniProtKB/Swiss-Prot
- A8K0Z9, B7Z209, Q5T6P4, Q5T6P7, Q8ND10, Q8ND83, Q96NV0
- UniProtKB/TrEMBL
-
A0A0A0MSS3
- Related
- ENSP00000400921.2, ENST00000418532.6
- Conserved Domains (1) summary
-
- pfam15301
Location:209 → 590
- SLAIN; SLAIN motif-containing family
-
NM_001242869.2 → NP_001229798.1 SLAIN motif-containing protein 1 isoform D
See identical proteins and their annotated locations for NP_001229798.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region, uses a downstream in-frame start codon, and lacks an internal in-frame coding exon, compared to variant 1. The encoded isoform (D) is shorter at the N-terminus and lacks an internal segment, compared to isoform A. Both variants 4 and 5 encode isoform D.
- Source sequence(s)
-
AK289600, DA096260, DA343547
- Consensus CDS
-
CCDS55901.1
- UniProtKB/Swiss-Prot
-
Q8ND83
- Related
- ENSP00000314443.5, ENST00000314070.9
- Conserved Domains (1) summary
-
- pfam15301
Location:20 → 191
- SLAIN; SLAIN motif-containing family
-
NM_001242870.2 → NP_001229799.1 SLAIN motif-containing protein 1 isoform D
See identical proteins and their annotated locations for NP_001229799.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, lacks a portion of the 5' coding region, uses a downstream in-frame start codon, and lacks an internal in-frame coding exon, compared to variant 1. The encoded isoform (D) is shorter at the N-terminus and lacks an internal segment, compared to isoform A. Both variants 4 and 5 encode isoform D.
- Source sequence(s)
-
AL834203, DA343547
- Consensus CDS
-
CCDS55901.1
- UniProtKB/Swiss-Prot
-
Q8ND83
- Conserved Domains (1) summary
-
- pfam15301
Location:20 → 191
- SLAIN; SLAIN motif-containing family
-
NM_001242871.2 → NP_001229800.1 SLAIN motif-containing protein 1 isoform E
See identical proteins and their annotated locations for NP_001229800.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR, lacks a portion of the 5' coding region, uses an alternate start codon, and includes an alternate splice site in its 5' coding region, compared to variant 1. The encoded isoform (E) has a distinct and shorter N-terminus, compared to isoform A.
- Source sequence(s)
-
AK295423, BC045177, DA343547
- Consensus CDS
-
CCDS73589.1
- UniProtKB/TrEMBL
- A0A0C4DFN6, B7Z326
- Related
- ENSP00000314546.8, ENST00000351546.7
- Conserved Domains (1) summary
-
- pfam15301
Location:21 → 304
- SLAIN; SLAIN motif-containing family
-
NM_001366665.1 → NP_001353594.1 SLAIN motif-containing protein 1 isoform F
Status: VALIDATED
- Source sequence(s)
-
AL354831
- Consensus CDS
-
CCDS91821.1
- UniProtKB/TrEMBL
-
A0A994J5K0
- Related
- ENSP00000516138.1, ENST00000705543.1
- Conserved Domains (1) summary
-
- pfam15301
Location:46 → 476
- SLAIN; SLAIN motif-containing family
-
NM_001366666.1 → NP_001353595.1 SLAIN motif-containing protein 1 isoform B
Status: VALIDATED
- Source sequence(s)
-
AL354831
- Consensus CDS
-
CCDS9460.1
- UniProtKB/TrEMBL
-
A0A0C4DFN6
- Related
- ENSP00000351507.2, ENST00000358679.3
- Conserved Domains (1) summary
-
- pfam15301
Location:1 → 305
- SLAIN; SLAIN motif-containing family
-
NM_001411026.1 → NP_001397955.1 SLAIN motif-containing protein 1 isoform G
Status: VALIDATED
- Description
- Transcript Variant: This variant (9) represents the allele encoded by the GRCh38 reference genome and encodes isoform (G).
- Source sequence(s)
-
AL354831
- Consensus CDS
-
CCDS91820.1
- UniProtKB/TrEMBL
-
Q5T6P1
- Related
- ENSP00000403049.2, ENST00000446759.6
-
NM_001412123.1 → NP_001399052.1 SLAIN motif-containing protein 1 isoform H
Status: VALIDATED
- Source sequence(s)
-
CP068265
-
NM_001412125.1 → NP_001399054.1 SLAIN motif-containing protein 1 isoform I
Status: VALIDATED
- Description
- Transcript Variant: This variant (11) uses the same exon combination as variant 9 but represents the allele encoded by the T2T genome assembly. The encoded isoform (I) has a slightly different sequence in the N-terminal region compared to isoform G.
- Source sequence(s)
-
CP068265
-
NM_144595.4 → NP_653196.1 SLAIN motif-containing protein 1 isoform B
See identical proteins and their annotated locations for NP_653196.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses a downstream in-frame start codon, compared to variant 1. The encoded isoform (B) is shorter at the N-terminus, compared to isoform A.
- Source sequence(s)
-
BC045177, DA343547
- Consensus CDS
-
CCDS9460.1
- UniProtKB/TrEMBL
-
A0A0C4DFN6
- Conserved Domains (1) summary
-
- pfam15301
Location:1 → 305
- SLAIN; SLAIN motif-containing family
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000013.11 Reference GRCh38.p14 Primary Assembly
- Range
-
77697687..77764229
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060937.1 Alternate T2T-CHM13v2.0
- Range
-
76922360..76989219
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)