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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001136115.3 → NP_001129587.1 F-box only protein 28 isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an exon in the 3' coding region, which results in a frameshift, compared to variant 1. The encoded isoform (b) is shorter and has a distinct C-terminus, compared to isoform a.
- Source sequence(s)
-
AL390122
- Consensus CDS
-
CCDS44320.1
- UniProtKB/Swiss-Prot
-
Q9NVF7
- Related
- ENSP00000416888.2, ENST00000424254.6
- Conserved Domains (1) summary
-
- pfam00646
Location:67 → 94
- F-box; F-box domain
-
NM_015176.4 → NP_055991.1 F-box only protein 28 isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a).
- Source sequence(s)
-
AL390122
- Consensus CDS
-
CCDS1539.1
- UniProtKB/Swiss-Prot
- E9PEM8, O75070, Q9NVF7
- Related
- ENSP00000355827.5, ENST00000366862.10
- Conserved Domains (1) summary
-
- pfam00646
Location:67 → 108
- F-box; F-box domain
RNA
-
NR_049764.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL390122
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
224114111..224162047
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
223303343..223351289
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)