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    suco SUN domain containing ossification factor [ Danio rerio (zebrafish) ]

    Gene ID: 558218, updated on 27-Mar-2024

    Summary

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    Official Symbol
    sucoprovided by ZNC
    Official Full Name
    SUN domain containing ossification factorprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-2941
    See related
    Ensembl:ENSDARG00000016532 AllianceGenome:ZFIN:ZDB-GENE-030131-2941
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc22a08; wu:fc22a08; si:ch211-184m19.1
    Summary
    Predicted to be involved in regulation of bone remodeling. Predicted to be active in cytoplasm and membrane. Orthologous to human SUCO (SUN domain containing ossification factor). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See suco in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (14684528..14781813, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (14788551..14885827, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene si:dkey-69c1.1 Neighboring gene secernin 2 Neighboring gene uncharacterized LOC101887022 Neighboring gene transmembrane p24 trafficking protein 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution and genomic organization of muscle microRNAs in fish genomes. Nachtigall PG, et al. BMC Evol Biol, 2014 Sep 25. PMID 25253178, Free PMC Article
    2. Evolutionary evidence of tumor necrosis factor super family members in the Japanese pufferfish (Takifugu rubripes): Comprehensive genomic identification and expression analysis. Biswas G, et al. Mar Genomics, 2015 Aug. PMID 25792259
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in regulation of bone remodeling IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    SUN domain-containing ossification factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      14684528..14781813 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021468608.1 → XP_021324283.1  SUN domain-containing ossification factor isoform X4

      UniProtKB/TrEMBL
      A0A8M9PC58
      Conserved Domains (4) summary
      pfam03938
      Location:1031 → 1105
      OmpH; Outer membrane protein (OmpH-like)
      pfam07738
      Location:386 → 515
      Sad1_UNC; Sad1 / UNC-like C-terminal
      cl26464
      Location:132 → 325
      Atrophin-1; Atrophin-1 family
      cl27169
      Location:50 → 201
      ZipA; ZipA C-terminal domain. ZipA, a membrane-anchored protein, is one of at least nine essential gene products necessary for assembly of the septal ring which mediates cell division in E.coli. ZipA and FtsA directly bind FtsZ, a homolog of eukaryotic ...

    2. XM_005160445.4 → XP_005160502.1  SUN domain-containing ossification factor isoform X6

      UniProtKB/TrEMBL
      A0A8M2B7A0, F1Q595
      Related
      ENSDARP00000015683.7, ENSDART00000026969.10
      Conserved Domains (1) summary
      pfam07738
      Location:349 → 478
      Sad1_UNC; Sad1 / UNC-like C-terminal

    3. XM_681409.9 → XP_686501.6  SUN domain-containing ossification factor isoform X5

      UniProtKB/TrEMBL
      A0A2R8QLX4, A0A8N7T788
      Related
      ENSDARP00000156448.1, ENSDART00000179912.1
      Conserved Domains (1) summary
      pfam07738
      Location:386 → 508
      Sad1_UNC; Sad1 / UNC-like C-terminal

    4. XM_021468609.1 → XP_021324284.1  SUN domain-containing ossification factor isoform X7

      UniProtKB/TrEMBL
      A0A8M9PHS3
      Conserved Domains (4) summary
      pfam03938
      Location:1031 → 1105
      OmpH; Outer membrane protein (OmpH-like)
      pfam07738
      Location:386 → 515
      Sad1_UNC; Sad1 / UNC-like C-terminal
      cl26464
      Location:132 → 325
      Atrophin-1; Atrophin-1 family
      cl27169
      Location:50 → 201
      ZipA; ZipA C-terminal domain. ZipA, a membrane-anchored protein, is one of at least nine essential gene products necessary for assembly of the septal ring which mediates cell division in E.coli. ZipA and FtsA directly bind FtsZ, a homolog of eukaryotic ...

    5. XM_009294611.3 → XP_009292886.1  SUN domain-containing ossification factor isoform X2

      UniProtKB/TrEMBL
      A0A8M3ALE3
      Conserved Domains (1) summary
      pfam07738
      Location:386 → 515
      Sad1_UNC; Sad1 / UNC-like C-terminal

    6. XM_021468607.1 → XP_021324282.1  SUN domain-containing ossification factor isoform X3

      UniProtKB/TrEMBL
      A0A8M9P2X0
      Conserved Domains (4) summary
      pfam03938
      Location:1031 → 1105
      OmpH; Outer membrane protein (OmpH-like)
      pfam07738
      Location:386 → 515
      Sad1_UNC; Sad1 / UNC-like C-terminal
      cl26464
      Location:132 → 325
      Atrophin-1; Atrophin-1 family
      cl27169
      Location:50 → 201
      ZipA; ZipA C-terminal domain. ZipA, a membrane-anchored protein, is one of at least nine essential gene products necessary for assembly of the septal ring which mediates cell division in E.coli. ZipA and FtsA directly bind FtsZ, a homolog of eukaryotic ...

    7. XM_005160444.4 → XP_005160501.1  SUN domain-containing ossification factor isoform X1

      UniProtKB/TrEMBL
      A0A0R4IAV9, A0A8M2B794
      Related
      ENSDARP00000131810.1, ENSDART00000160481.2
      Conserved Domains (1) summary
      pfam07738
      Location:386 → 515
      Sad1_UNC; Sad1 / UNC-like C-terminal
    Nucleotide Protein Strain
    Heading Accession and Version

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