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    zgc:175135 zgc:175135 [ Danio rerio (zebrafish) ]

    Gene ID: 100137125, updated on 2-Nov-2024

    Summary

    Official Symbol
    zgc:175135provided by ZNC
    Official Full Name
    zgc:175135provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080214-1
    See related
    Ensembl:ENSDARG00000105499 AllianceGenome:ZFIN:ZDB-GENE-080214-1
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Acts upstream of or within response to steroid hormone. Is expressed in ovary. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See zgc:175135 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (18053337..18055134)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (17918702..17920499)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110440097 Neighboring gene uncharacterized LOC137496689 Neighboring gene uncharacterized LOC101886644 Neighboring gene pseudouridylate synthase RPUSD4, mitochondrial-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to steroid hormone IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC100137125

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001114722.2NP_001108194.2  uncharacterized protein LOC100137125 precursor

      Status: VALIDATED

      Source sequence(s)
      BC158201, BI885357, EH485927
      UniProtKB/TrEMBL
      A0A8M1NFU4, B0BLX6, F1QP18
      Related
      ENSDARP00000070231.5, ENSDART00000075750.7

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      18053337..18055134
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)