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    LOC101464142 granzyme B [ Maylandia zebra (zebra mbuna) ]

    Gene ID: 101464142, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC101464142
    Gene description
    granzyme B
    See related
    Ensembl:ENSMZEG00005010248
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Maylandia zebra
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
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    Genomic context

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    See LOC101464142 in Genome Data Viewer
    Location:
    chromosome: LG23
    Exon count:
    5
    Annotation release Status Assembly LG Location
    104 current M_zebra_UMD2a (GCF_000238955.4) LG23 NC_036801.1 (4668272..4670389, complement)
    101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531751.1 (1038361..1040478)

    Linkage Group LG23 - NC_036801.1Genomic Context describing neighboring genes Neighboring gene granzyme E Neighboring gene mast cell protease 1A Neighboring gene granzyme B-like Neighboring gene granzyme G-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    granzyme B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference M_zebra_UMD2a Primary Assembly

    Genomic

    1. NC_036801.1 Reference M_zebra_UMD2a Primary Assembly

      Range
      4668272..4670389 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004554901.2 → XP_004554958.2  granzyme B

      UniProtKB/TrEMBL
      A0A3P9BVF1
      Related
      ENSMZEP00005013616.1, ENSMZET00005014081.1
      Conserved Domains (1) summary
      cd00190
      Location:25 → 240
      Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
    Nucleotide Protein
    Heading Accession and Version

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