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Source database (GenBank or RefSeq) File type

M_zebra_UMD2a

Organism name:

Maylandia zebra (zebra mbuna)

Infraspecific name:

Ecotype: Mazinzi reef

Isolate:

#2_Kocher and #3_Kocher

Sex:

pooled male and female

BioSample:

SAMN03892560

BioProject:

PRJNA60369

Submitter:

Broad Institute

Date:

2018/04/10

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000238955.5 (latest)

RefSeq assembly accession:

GCF_000238955.4 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

AGTA05

Assembly method:

FALCON v. 0.4.0

Expected final version:

yes

Genome coverage:

65.0x

Sequencing technology:

PacBio

IDs: 1676551 [UID] 6363178 [GenBank] 6387918 [RefSeq]

See Genome Information for Maylandia zebra

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000238955.5	≠	GCF_000238955.4	M_zebra_UMD2a	Chromosome	Latest GenBank, Latest RefSeq
GCA_000238955.4	n/a	n/a	M_zebra_UMD2	Chromosome	Replaced GenBank
GCA_000238955.3	≠	GCF_000238955.2	M_zebra_UMD1	Scaffold	Replaced GenBank, Replaced RefSeq
GCA_000238955.2	=	GCF_000238955.1	MetZeb1.1	Scaffold	Replaced GenBank, Replaced RefSeq
GCA_000238955.1	n/a	n/a	MetZeb1.0	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	957,485,262
Total ungapped length	957,421,162
Gaps between scaffolds	0
Number of scaffolds	1,690
Scaffold N50	32,660,920
Scaffold L50	13
Number of contigs	2,331
Contig N50	1,407,748
Contig L50	189
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	1,690

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM009180.2	=	NC_036780.1	0
Linkage Group LG2	CM009181.2	=	NC_036781.1	0
Linkage Group LG3	CM009182.2	=	NC_036782.1	0
Linkage Group LG4	CM009183.2	=	NC_036783.1	0
Linkage Group LG5	CM009184.2	=	NC_036784.1	0
Linkage Group LG6	CM009185.2	=	NC_036785.1	0
Linkage Group LG7	CM009186.2	=	NC_036786.1	0
Linkage Group LG8	CM009187.2	=	NC_036787.1	0
Linkage Group LG9	CM009188.2	=	NC_036788.1	0
Linkage Group LG10	CM009189.2	=	NC_036789.1	0
Linkage Group LG11	CM009190.2	=	NC_036790.1	0
Linkage Group LG12	CM009191.2	=	NC_036791.1	0
Linkage Group LG13	CM009192.2	=	NC_036792.1	0
Linkage Group LG14	CM009193.2	=	NC_036793.1	0
Linkage Group LG15	CM009194.2	=	NC_036794.1	0
Linkage Group LG16	CM009195.2	=	NC_036795.1	0
Linkage Group LG17	CM009196.2	=	NC_036796.1	0
Linkage Group LG18	CM009197.2	=	NC_036797.1	0
Linkage Group LG19	CM009198.2	=	NC_036798.1	0
Linkage Group LG20	CM009199.2	=	NC_036799.1	0
Linkage Group LG22	CM009200.2	=	NC_036800.1	0
Linkage Group LG23	CM009201.2	=	NC_036801.1	0
unplaced	n/a	n/a	n/a	1,667

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	957,468,680	1,689	957,404,580	32,660,920	641
Linkage Group LG1	38,676,823	1	38,674,223	38,676,823	26
Linkage Group LG2	32,660,920	1	32,658,620	32,660,920	23
Linkage Group LG3	37,314,939	1	37,309,539	37,314,939	54
Linkage Group LG4	30,518,969	1	30,516,069	30,518,969	29
Linkage Group LG5	36,170,306	1	36,167,906	36,170,306	24
Linkage Group LG6	39,774,503	1	39,771,403	39,774,503	31
Linkage Group LG7	64,916,660	1	64,911,860	64,916,660	48
Linkage Group LG8	23,971,387	1	23,969,187	23,971,387	22
Linkage Group LG9	21,023,328	1	21,021,328	21,023,328	20
Linkage Group LG10	32,356,376	1	32,353,176	32,356,376	32
Linkage Group LG11	32,446,080	1	32,443,680	32,446,080	24
Linkage Group LG12	34,086,040	1	34,084,140	34,086,040	19
Linkage Group LG13	32,072,427	1	32,069,927	32,072,427	25
Linkage Group LG14	37,870,038	1	37,867,438	37,870,038	26
Linkage Group LG15	34,548,429	1	34,545,229	34,548,429	32
Linkage Group LG16	34,742,138	1	34,738,838	34,742,138	33
Linkage Group LG17	35,776,103	1	35,772,703	35,776,103	34
Linkage Group LG18	29,505,383	1	29,502,183	29,505,383	32
Linkage Group LG19	25,963,618	1	25,961,218	25,963,618	24
Linkage Group LG20	29,789,237	1	29,787,537	29,789,237	17
Linkage Group LG22	34,725,690	1	34,723,590	34,725,690	21
Linkage Group LG23	42,088,218	1	42,083,718	42,088,218	45
unplaced	196,471,068	1,667	196,471,068	211,213	0

Assembly

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M_zebra_UMD2a

See Genome Information for Maylandia zebra

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear