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    nitr3d novel immune-type receptor 3d [ Danio rerio (zebrafish) ]

    Gene ID: 171006, updated on 28-Oct-2024

    Summary

    Official Symbol
    nitr3dprovided by ZNC
    Official Full Name
    novel immune-type receptor 3dprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-020225-34
    See related
    AllianceGenome:ZFIN:ZDB-GENE-020225-34
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    nitr3; nitr3r.2; nitr3r.4; nitr3r.5; nitr3r.6; nitr3r.7; nitr3r.8; nitr3r.10; nitr3r.11; SI:dZ169I8.6; si:dz186f8.1
    Summary
    Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Oct 2024]
    Orthologs
    NEW
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    Genomic context

    See nitr3d in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (17421049..17566221, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (17169309..17173572, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene novel immune-type receptor 3a Neighboring gene novel immune-type receptor 3b Neighboring gene novel immune-type receptor 2a Neighboring gene novel immune-type receptor 2b Neighboring gene novel immune-type receptor 1a Neighboring gene si:busm1-186f8.12, pseudogene Neighboring gene si:busm1-186f8.13, pseudogene Neighboring gene novel immune-type receptor 1b Neighboring gene novel immune-type receptor 1c Neighboring gene novel immune-type receptor 2c, pseudogene Neighboring gene si:busm1-219h16.18, pseudogene Neighboring gene novel immune-type receptor 1d Neighboring gene novel immune-type receptor 1f Neighboring gene novel immune-type receptor 1k Neighboring gene uncharacterized LOC137487204 Neighboring gene si:busm1-263j20.12, pseudogene Neighboring gene si:busm1-105l16.14, pseudogene Neighboring gene uncharacterized LOC137496092 Neighboring gene novel immune-type receptor 1h Neighboring gene novel immune-type receptor 1l Neighboring gene novel immune-type receptor 1m Neighboring gene novel immune-type receptor 1n Neighboring gene novel immune-type receptor 5 Neighboring gene novel immune-type receptor 4a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    novel immune-type receptor 3d
    Names
    immune-type receptor
    novel immune-type receptor 3, related 2
    novel immune-type receptor 3, related 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198355.2NP_938169.2  novel immune-type receptor 3d precursor

      Status: VALIDATED

      Source sequence(s)
      CU179759
      UniProtKB/TrEMBL
      Q8UV47, Q8UVA3
      Conserved Domains (1) summary
      pfam07686
      Location:26130
      V-set; Immunoglobulin V-set domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      17421049..17566221 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068222154.1XP_068078255.1  novel immune-type receptor 3d isoform X1

    2. XM_068222153.1XP_068078254.1  novel immune-type receptor 3d isoform X1

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394681.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      200272..204812 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)