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    LOC9266435 trihelix transcription factor ASR3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266435, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC9266435
    Gene description
    trihelix transcription factor ASR3
    Locus tag
    OSNPB_040670900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SH3; sh4
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC9266435 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34230855..34233527, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene probable arabinosyltransferase ARAD1 Neighboring gene plant UBX domain-containing protein 7 Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene probable adenylate kinase 6, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A single base change explains the independent origin of and selection for the nonshattering gene in African rice domestication. Win KT, et al. New Phytol, 2017 Mar. PMID 27861933

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    trihelix transcription factor ASR3
    Names
    Os04g0670900
    putative shattering protein
    shattering 4
    shattering protein
    trihelix-type transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      34230855..34233527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779851.2 → XP_015635337.1  trihelix transcription factor ASR3

      UniProtKB/TrEMBL
      A0A0P0WG66, A2XYT7, D9YVB8, Q1PIH9, Q258Z1, Q7XR48
      Conserved Domains (1) summary
      pfam13837
      Location:66 → 151
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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