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    cep97 centrosomal protein 97 [ Danio rerio (zebrafish) ]

    Gene ID: 386640, updated on 2-Nov-2024

    Summary

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    Official Symbol
    cep97provided by ZNC
    Official Full Name
    centrosomal protein 97provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-031030-11
    See related
    Ensembl:ENSDARG00000102407 AllianceGenome:ZFIN:ZDB-GENE-031030-11
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    lrriq2; zgc:63856
    Summary
    Orthologous to human CEP97 (centrosomal protein 97). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See cep97 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (11961..16373)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (11926..16373)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L24 Neighboring gene nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta Neighboring gene embryonic ectoderm development

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Structural characteristics of zebrafish orthologs of adaptor molecules that associate with transmembrane immune receptors. Yoder JA, et al. Gene, 2007 Oct 15. PMID 17719728, Free PMC Article
    2. RNA structure replaces the need for U2AF2 in splicing. Lin CL, et al. Genome Res, 2016 Jan. PMID 26566657, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    centrosomal protein of 97 kDa
    Names
    leucine-rich repeats and IQ motif containing 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198371.2 → NP_938185.2  centrosomal protein of 97 kDa

      Status: VALIDATED

      Source sequence(s)
      CU651657
      UniProtKB/TrEMBL
      A0A8M1PB79
      Related
      ENSDARP00000130314.1, ENSDART00000166393.1
      Conserved Domains (4) summary
      cd00116
      Location:24 → 196
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:23 → 44
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:87 → 129
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:87 → 143
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      11961..16373
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009305058.4 → XP_009303333.3  centrosomal protein of 97 kDa isoform X1

    Nucleotide Protein
    Heading Accession and Version

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