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    LOC108343011 pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like [ Vigna angularis (adzuki bean) ]

    Gene ID: 108343011, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC108343011
    Gene description
    pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like
    Locus tag
    HKW66_Vig0082570
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vigna angularis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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    Genomic context

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    See LOC108343011 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 4 NC_068973.1 (13934833..13950557)
    100 previous assembly Vigan1.1 (GCF_001190045.1) 9 NC_030645.1 (16527487..16530617, complement)

    Chromosome 4 - NC_068973.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-3-phosphatase SAC1-like Neighboring gene uncharacterized LOC128196345 Neighboring gene pentatricopeptide repeat-containing protein At3g62890-like Neighboring gene ribonuclease 3-like protein 2 Neighboring gene uncharacterized LOC128196346 Neighboring gene amino acid permease 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like
    Names
    Vigan.UMG080800
    Vigan.UMG147000
    Vigan.UMG148500
    Vigan.UMG167800
    Vigan.UMG167900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1680809v1 Primary Assembly

    Genomic

    1. NC_068973.1 Reference ASM1680809v1 Primary Assembly

      Range
      13934833..13950557
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_052876919.1 → XP_052732879.1  pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like

      UniProtKB/TrEMBL
      A0A0S3TEF4, A0A8T0KID0

    2. XM_052876920.1 → XP_052732880.1  pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like

      UniProtKB/TrEMBL
      A0A0S3TEF4, A0A8T0KID0
    Nucleotide Protein
    Heading Accession and Version

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