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Source database (GenBank or RefSeq) File type

Vigan1.1

Organism name:

Vigna angularis (adzuki bean)

Infraspecific name:

Cultivar: Jingnong 6

BioSample:

SAMN03074979

BioProject:

PRJNA261643

Submitter:

Beijing University of Agriculture

Date:

2015/07/31

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_001190045.1 (latest)

RefSeq assembly accession:

GCF_001190045.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for GenBank version

WGS Project:

JZJH01

Assembly method:

soapdenovo v. 2.04

Expected final version:

yes

Genome coverage:

167.67x

Sequencing technology:

Illumina HiSeq 2000

IDs: 432871 [UID] 2034928 [GenBank] 3341718 [RefSeq]

See Genome Information for Vigna angularis

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001190045.1	≠	GCF_001190045.1	Vigan1.1	Chromosome	Latest GenBank, RefSeq suppressed

Comment

Global statistics

Total sequence length	466,744,453
Total ungapped length	449,759,856
Gaps between scaffolds	352
Number of scaffolds	37,725
Scaffold N50	1,292,063
Scaffold L50	97
Number of contigs	58,637
Contig N50	38,355
Contig L50	3,464
Total number of chromosomes and plasmids	11
Number of component sequences (WGS or clone)	58,637

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM003371.1	=	NC_030637.1	0
Chromosome 2	CM003372.1	=	NC_030638.1	0
Chromosome 3	CM003373.1	=	NC_030639.1	0
Chromosome 4	CM003374.1	=	NC_030640.1	0
Chromosome 5	CM003375.1	=	NC_030641.1	0
Chromosome 6	CM003376.1	=	NC_030642.1	0
Chromosome 7	CM003377.1	=	NC_030643.1	0
Chromosome 8	CM003378.1	=	NC_030644.1	0
Chromosome 9	CM003379.1	=	NC_030645.1	0
Chromosome 10	CM003380.1	=	NC_030646.1	0
Chromosome 11	CM003381.1	=	NC_030647.1	0
unplaced	n/a	n/a	n/a	37,362

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	466,744,453	37,725	449,759,856	1,292,063	20,912	352
Chromosome 1	42,234,885	27	41,072,165	2,094,324	1,871	26
Chromosome 2	35,625,406	36	34,505,049	1,653,963	1,565	35
Chromosome 3	41,204,908	41	39,755,853	2,196,185	1,874	40
Chromosome 4	34,671,004	27	33,666,083	2,028,739	1,456	26
Chromosome 5	30,687,117	45	29,517,596	1,151,273	1,501	44
Chromosome 6	19,356,003	19	18,737,987	1,545,030	911	18
Chromosome 7	39,404,547	36	38,120,515	1,604,230	1,658	35
Chromosome 8	30,791,815	31	29,932,945	1,486,451	1,221	30
Chromosome 9	31,747,250	25	30,828,659	3,440,375	1,408	24
Chromosome 10	40,424,437	47	39,027,039	1,412,668	1,736	46
Chromosome 11	26,588,826	29	25,674,846	1,753,931	1,151	28
unplaced	94,008,255	37,362	88,921,119	346,859	4,560	0

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Vigan1.1

See Genome Information for Vigna angularis

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

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