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    LOC103323893 putative disease resistance protein At1g50180 [ Prunus mume (Japanese apricot) ]

    Gene ID: 103323893, updated on 28-Dec-2023

    Summary

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    Gene symbol
    LOC103323893
    Gene description
    putative disease resistance protein At1g50180
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prunus mume
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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    Genomic context

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    See LOC103323893 in Genome Data Viewer
    Location:
    chromosome: LG2
    Exon count:
    3
    Annotation release Status Assembly LG Location
    101 current P.mume_V1.0 (GCF_000346735.1) LG2 NC_024127.1 (38924200..38928285, complement)

    Linkage Group LG2 - NC_024127.1Genomic Context describing neighboring genes Neighboring gene protein PLANT CADMIUM RESISTANCE 7-like Neighboring gene cell number regulator 10-like Neighboring gene peroxisomal membrane protein PMP22 Neighboring gene uncharacterized LOC103323896

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_024127.1 Chromosome LG2 Reference P.mume_V1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative disease resistance protein At1g50180

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prunus mume Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.mume_V1.0 Primary Assembly

    Genomic

    1. NC_024127.1 Reference P.mume_V1.0 Primary Assembly

      Range
      38924200..38928285 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016792622.1 → XP_016648108.1  putative disease resistance protein At1g50180

      Conserved Domains (4) summary
      COG4886
      Location:617 → 838
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:2 → 126
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:634 → 656
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:171 → 469
      NB-ARC; NB-ARC domain

    2. XM_016792621.1 → XP_016648107.1  putative disease resistance protein At1g50180

      Conserved Domains (4) summary
      COG4886
      Location:617 → 838
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:2 → 126
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:634 → 656
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:171 → 469
      NB-ARC; NB-ARC domain

    3. XM_008225914.1 → XP_008224136.1  putative disease resistance protein At1g50180

      See identical proteins and their annotated locations for XP_008224136.1

      Conserved Domains (4) summary
      COG4886
      Location:617 → 838
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:2 → 126
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:634 → 656
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:171 → 469
      NB-ARC; NB-ARC domain

    4. XM_008225913.1 → XP_008224135.1  putative disease resistance protein At1g50180

      See identical proteins and their annotated locations for XP_008224135.1

      Conserved Domains (4) summary
      COG4886
      Location:617 → 838
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:2 → 126
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:634 → 656
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:171 → 469
      NB-ARC; NB-ARC domain
    Nucleotide Protein
    Heading Accession and Version

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