dicp3.3 diverse immunoglobulin domain-containing protein 3.3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: dicp3.3provided by ZNC
Official Full Name: diverse immunoglobulin domain-containing protein 3.3provided by ZNC
Primary source: ZFIN:ZDB-GENE-120306-20
See related: Ensembl:ENSDARG00000087706 AllianceGenome:ZFIN:ZDB-GENE-120306-20
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable MHC class II protein binding activity and protein tyrosine kinase binding activity. Predicted to be involved in T cell activation; interleukin-15-mediated signaling pathway; and positive regulation of ERK1 and ERK2 cascade. Predicted to be active in external side of plasma membrane and membrane raft. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: Annotation category: partial on reference assembly
Orthologs: all
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Genomic context

Location:: chromosome: 16

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (21808418..21810668, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (22004166..22006416, complement)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables MHC class II protein binding	IBA Inferred from Biological aspect of Ancestor more info
enables protein tyrosine kinase binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in T cell activation	IBA Inferred from Biological aspect of Ancestor more info
involved_in interleukin-15-mediated signaling pathway	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of ERK1 and ERK2 cascade	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in external side of plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
is_active_in membrane raft	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: diverse immunoglobulin domain-containing protein 3.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001258235.2 → NP_001245164.1 diverse immunoglobulin domain-containing protein 3.3 isoform 2 precursor

See identical proteins and their annotated locations for NP_001245164.1

Status: VALIDATED

Source sequence(s)

FP015862

Related

ENSDARP00000127641.1, ENSDART00000156575.2

Conserved Domains (2) summary

smart00410
Location:34 → 122

IG_like; Immunoglobulin like

cl11960
Location:34 → 101

Ig; Immunoglobulin domain
NM_001423666.1 → NP_001410595.1 diverse immunoglobulin domain-containing protein 3.3 isoform 1 precursor

Status: VALIDATED

Source sequence(s)

FP015862

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007127.7 Reference GRCz11 Primary Assembly

Range

21808418..21810668 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

NW_018394960.1 Reference GRCz11 ALT_DRER_TU_1

Range

189060..196971 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021472981.1 → XP_021328656.1 diverse immunoglobulin domain-containing protein 3.3 isoform X1

Conserved Domains (1) summary

smart00410
Location:35 → 113

IG_like; Immunoglobulin like
XM_021472982.1 → XP_021328657.1 diverse immunoglobulin domain-containing protein 3.3 isoform X2

Conserved Domains (1) summary

smart00410
Location:35 → 113

IG_like; Immunoglobulin like