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    HEPH hephaestin [ Pan troglodytes (chimpanzee) ]

    Gene ID: 465679, updated on 10-Oct-2024

    Summary

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    Gene symbol
    HEPH
    Gene description
    hephaestin
    Locus tag
    CK820_G0033189
    See related
    Ensembl:ENSPTRG00000046447
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See HEPH in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) X NC_072421.2 (63810804..63909719)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) X NC_072421.1 (63806900..63905813)

    Chromosome X - NC_072421.2Genomic Context describing neighboring genes Neighboring gene ataxin-7-like protein 3 Neighboring gene eukaryotic translation initiation factor 4B-like Neighboring gene mitochondrial fission regulator 1-like Neighboring gene G-protein coupled receptor 83-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ferroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hephaestin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072421.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      63810804..63909719
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016943874.4 → XP_016799363.1  hephaestin isoform X1

      UniProtKB/TrEMBL
      A0A2I3TP14, A0A2J8L3L9
      Related
      ENSPTRP00000090964.1

    2. XM_054677049.2 → XP_054533024.1  hephaestin isoform X1

      UniProtKB/TrEMBL
      A0A2I3TP14

    3. XM_016943875.4 → XP_016799364.1  hephaestin isoform X2

      UniProtKB/TrEMBL
      A0A2J8L3L9, A0A2J8L3N7
      Conserved Domains (6) summary
      cd04222
      Location:29 → 211
      CuRO_1_ceruloplasmin; The first cupredoxin domain of Ceruloplasmin
      cd04224
      Location:380 → 575
      CuRO_3_ceruloplasmin; The third cupredoxin domain of Ceruloplasmin
      cd04225
      Location:736 → 908
      CuRO_5_ceruloplasmin; The fifth cupredoxin domain of Ceruloplasmin
      cd11021
      Location:226 → 366
      CuRO_2_ceruloplasmin; The second cupredoxin domain of Ceruloplasmin
      cd11022
      Location:578 → 721
      CuRO_4_ceruloplasmin; The fourth cupredoxin domain of Ceruloplasmin
      cl19115
      Location:923 → 1066
      Cupredoxin; Cupredoxin superfamily

    4. XM_016943876.4 → XP_016799365.1  hephaestin isoform X3

      UniProtKB/TrEMBL
      A0A2I3SMP1, A0A2J8L3L9, A0A2J8L3M0, A0A6D2WGY2
      Related
      ENSPTRP00000078282.1
      Conserved Domains (4) summary
      cd04222
      Location:29 → 211
      CuRO_1_ceruloplasmin; The first cupredoxin domain of Ceruloplasmin
      cd04225
      Location:544 → 716
      CuRO_5_ceruloplasmin; The fifth cupredoxin domain of Ceruloplasmin
      cd11021
      Location:226 → 366
      CuRO_2_ceruloplasmin; The second cupredoxin domain of Ceruloplasmin
      cl19115
      Location:380 → 723
      Cupredoxin; Cupredoxin superfamily

    5. XM_063804643.1 → XP_063660713.1  hephaestin isoform X4

      UniProtKB/TrEMBL
      A0A2J8L3N8

    RNA

    1. XR_001714094.4 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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