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    Btbd16 BTB domain containing 16 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361658, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Btbd16provided by RGD
    Official Full Name
    BTB domain containing 16provided by RGD
    Primary source
    RGD:1311454
    See related
    EnsemblRapid:ENSRNOG00000036675 AllianceGenome:RGD:1311454
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311454
    Summary
    Orthologous to human BTBD16 (BTB domain containing 16). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward (RPKM 177.6) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Btbd16 in Genome Data Viewer
    Location:
    1q37-q41
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (194765241..194819786)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (185334971..185389518)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (201337370..201391246)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene transforming, acidic coiled-coil containing protein 2 Neighboring gene uncharacterized LOC103691241 Neighboring gene uncharacterized LOC134483936 Neighboring gene pleckstrin homology domain containing A1 Neighboring gene uncharacterized LOC134485181 Neighboring gene HtrA serine peptidase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein 16
    Names
    BTB (POZ) domain containing 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017464.2 → NP_001017464.1  BTB/POZ domain-containing protein 16

      See identical proteins and their annotated locations for NP_001017464.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079317
      UniProtKB/Swiss-Prot
      Q6AXU1
      UniProtKB/TrEMBL
      A0A8I6A281
      Conserved Domains (1) summary
      smart00875
      Location:221 → 293
      BACK; BTB And C-terminal Kelch

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      194765241..194819786
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017589421.3 → XP_017444910.1  BTB/POZ domain-containing protein 16 isoform X2

      UniProtKB/TrEMBL
      A0A8I6A281

    2. XM_063267816.1 → XP_063123886.1  BTB/POZ domain-containing protein 16 isoform X3

      UniProtKB/Swiss-Prot
      Q6AXU1

    3. XM_063267835.1 → XP_063123905.1  BTB/POZ domain-containing protein 16 isoform X8

    4. XM_017589424.3 → XP_017444913.1  BTB/POZ domain-containing protein 16 isoform X6

    5. XM_063267834.1 → XP_063123904.1  BTB/POZ domain-containing protein 16 isoform X7

    6. XM_017589422.3 → XP_017444911.1  BTB/POZ domain-containing protein 16 isoform X5

      UniProtKB/TrEMBL
      A0A8I6A281

    7. XM_017589420.3 → XP_017444909.1  BTB/POZ domain-containing protein 16 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A281

    8. XM_008759903.4 → XP_008758125.1  BTB/POZ domain-containing protein 16 isoform X4

      UniProtKB/TrEMBL
      A0A8I6A281
      Related
      ENSRNOP00000062948.2, ENSRNOT00000067742.4
      Conserved Domains (1) summary
      smart00875
      Location:222 → 294
      BACK; BTB And C-terminal Kelch

    RNA

    1. XR_005488855.2 RNA Sequence

    2. XR_005488853.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AXU1.1 GenPept UniProtKB/Swiss-Prot:Q6AXU1

    Gene LinkOut

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