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    gpatch8 G patch domain containing 8 [ Danio rerio (zebrafish) ]

    Gene ID: 565404, updated on 2-Nov-2024

    Summary

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    Official Symbol
    gpatch8provided by ZNC
    Official Full Name
    G patch domain containing 8provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6966
    See related
    Ensembl:ENSDARG00000059768 AllianceGenome:ZFIN:ZDB-GENE-030131-6966
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    gpatc8; fa12a04; fb30h12; wu:fa12a04; wu:fb30h12; wu:fj32a09
    Summary
    Predicted to enable metal ion binding activity and nucleic acid binding activity. Predicted to be active in nucleus. Orthologous to human GPATCH8 (G-patch domain containing 8). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See gpatch8 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (37663614..37699997, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (37521756..37558134, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108182894 Neighboring gene golgi SNAP receptor complex member 2 Neighboring gene uncharacterized LOC137490682 Neighboring gene mitogen-activated protein kinase kinase kinase 14a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    G patch domain-containing protein 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001328037.1 → NP_001314966.1  G patch domain-containing protein 8

      Status: VALIDATED

      Source sequence(s)
      BX640549, CR388062
      UniProtKB/TrEMBL
      A0A8M1P9F2, I3IS56
      Related
      ENSDARP00000125720.1, ENSDART00000151193.3
      Conserved Domains (2) summary
      pfam01585
      Location:41 → 83
      G-patch; G-patch domain
      pfam12171
      Location:137 → 164
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      37663614..37699997 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068217359.1 → XP_068073460.1  G patch domain-containing protein 8 isoform X1

      Related
      ENSDARP00000155610.1, ENSDART00000185858.1

    2. XM_068217357.1 → XP_068073458.1  G patch domain-containing protein 8 isoform X1

    3. XM_021471027.2 → XP_021326702.1  G patch domain-containing protein 8 isoform X2

      UniProtKB/TrEMBL
      A0A8M9P7K7
      Conserved Domains (2) summary
      pfam12171
      Location:58 → 85
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
      cl25732
      Location:4 → 126
      SMC_N; RecF/RecN/SMC N terminal domain

    4. XM_021470992.2 → XP_021326667.1  G patch domain-containing protein 8 isoform X1

      UniProtKB/TrEMBL
      A0A2R8RXW4, A0A8M9P7I3
      Conserved Domains (2) summary
      pfam12171
      Location:74 → 101
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
      cl25732
      Location:20 → 142
      SMC_N; RecF/RecN/SMC N terminal domain

    5. XM_021471015.2 → XP_021326690.1  G patch domain-containing protein 8 isoform X2

      UniProtKB/TrEMBL
      A0A8M9P7K7
      Conserved Domains (2) summary
      pfam12171
      Location:58 → 85
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
      cl25732
      Location:4 → 126
      SMC_N; RecF/RecN/SMC N terminal domain

    6. XM_068217358.1 → XP_068073459.1  G patch domain-containing protein 8 isoform X1

    7. XM_068217362.1 → XP_068073463.1  G patch domain-containing protein 8 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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