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    scrib scribble planar cell polarity protein [ Danio rerio (zebrafish) ]

    Gene ID: 368473, updated on 2-Nov-2024

    Summary

    Official Symbol
    scribprovided by ZNC
    Official Full Name
    scribble planar cell polarity proteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030616-572
    See related
    Ensembl:ENSDARG00000000861 AllianceGenome:ZFIN:ZDB-GENE-030616-572
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    scrb1; scribble; scribble1; si:zc12p8.1; si:ch211-12p8.1
    Summary
    Enables protein heterodimerization activity. Acts upstream of or within several processes, including establishment of mitotic spindle orientation; morphogenesis of an epithelium; and nervous system development. Located in membrane. Is expressed in anterior-posterior polarized posterior lateral line neuromast; brain; neural tube; and secondary posterior lateral line primordium. Orthologous to human SCRIB (scribble planar cell polarity protein). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    NEW
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    Genomic context

    See scrib in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    48
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (41159188..41275232)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (40878861..40995161)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine (serotonin) receptor 5A, genome duplicate b Neighboring gene poly-U binding splicing factor b Neighboring gene si:dkey-86l18.10 Neighboring gene kinesin family member 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein heterodimerization activity IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein kinase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in activation of GTPase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within anterior/posterior axon guidance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in apoptotic process involved in morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cell migration IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cell migration ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in cell population proliferation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in cell-cell adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cell-cell adhesion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within commissural neuron axon guidance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within convergent extension involved in gastrulation IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in establishment of apical/basal cell polarity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within establishment of mitotic spindle orientation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within establishment of planar polarity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in establishment or maintenance of epithelial cell apical/basal polarity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within motor neuron migration IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in negative regulation of mitotic cell cycle ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within neural tube formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within neuromast development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within neuron migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in neurotransmitter receptor transport postsynaptic membrane to endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in neurotransmitter receptor transport, endosome to postsynaptic membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive chemotaxis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of apoptotic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in receptor clustering IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within vasculature development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within vasculature development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in adherens junction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in adherens junction ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in anchoring junction IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in basolateral plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    colocalizes_with cell leading edge ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cell-cell junction ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in lamellipodium IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    is_active_in postsynaptic density IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    colocalizes_with postsynaptic membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    colocalizes_with postsynaptic membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    colocalizes_with presynaptic membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein scribble homolog
    Names
    landlocked
    llk
    scribbled planar cell polarity protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007175.2NP_001007176.1  protein scribble homolog

      See identical proteins and their annotated locations for NP_001007176.1

      Status: VALIDATED

      Source sequence(s)
      AL772146, CT574559
      UniProtKB/Swiss-Prot
      Q4H4B6
      Related
      ENSDARP00000068701.2, ENSDART00000074212.4
      Conserved Domains (6) summary
      cd00116
      Location:12262
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd00992
      Location:10031091
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
      pfam06484
      Location:12901404
      Ten_N; Teneurin Intracellular Region
      pfam12799
      Location:289329
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:3694
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      41159188..41275232
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477422.2XP_021333097.1  protein scribble homolog isoform X8

      UniProtKB/TrEMBL
      A0A8M9PNM8
      Conserved Domains (3) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
    2. XM_021477414.2XP_021333089.1  protein scribble homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M9Q7J8
      Conserved Domains (3) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
    3. XM_021477426.2XP_021333101.1  protein scribble homolog isoform X13

      UniProtKB/TrEMBL
      A0A8M9QBQ1
      Conserved Domains (3) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
    4. XM_021477419.2XP_021333094.1  protein scribble homolog isoform X6

      UniProtKB/TrEMBL
      A0A8M9Q7K5
      Conserved Domains (3) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
    5. XM_021477424.2XP_021333099.1  protein scribble homolog isoform X10

      UniProtKB/TrEMBL
      A0A8M9Q7L2
      Conserved Domains (3) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
    6. XM_068222177.1XP_068078278.1  protein scribble homolog isoform X17

    7. XM_021477427.2XP_021333102.1  protein scribble homolog isoform X14

      UniProtKB/TrEMBL
      A0A8M9PNN3
      Conserved Domains (3) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
    8. XM_021477425.2XP_021333100.1  protein scribble homolog isoform X11

      UniProtKB/TrEMBL
      A0A8M9QGP6
      Conserved Domains (4) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
      cl26464
      Location:12941592
      Atrophin-1; Atrophin-1 family
    9. XM_068222176.1XP_068078277.1  protein scribble homolog isoform X16

    10. XM_068222179.1XP_068078280.1  protein scribble homolog isoform X19

    11. XM_021477423.2XP_021333098.1  protein scribble homolog isoform X9

      UniProtKB/TrEMBL
      A0A8M9Q190
      Conserved Domains (4) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
      cl26464
      Location:12941613
      Atrophin-1; Atrophin-1 family
    12. XM_068222178.1XP_068078279.1  protein scribble homolog isoform X18

    13. XM_021477428.2XP_021333103.1  protein scribble homolog isoform X15

      UniProtKB/TrEMBL
      A0A8M9Q197
      Conserved Domains (3) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
    14. XM_068222180.1XP_068078281.1  protein scribble homolog isoform X21

    15. XM_068222184.1XP_068078285.1  protein scribble homolog isoform X28

    16. XM_068222181.1XP_068078282.1  protein scribble homolog isoform X24

    17. XM_021477416.2XP_021333091.1  protein scribble homolog isoform X3

      UniProtKB/TrEMBL
      A0A8M9QBP1
      Conserved Domains (4) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
      cl26464
      Location:12941572
      Atrophin-1; Atrophin-1 family
    18. XM_068222174.1XP_068078275.1  protein scribble homolog isoform X12

    19. XM_021477421.2XP_021333096.1  protein scribble homolog isoform X7

      UniProtKB/TrEMBL
      A0A8M9QBP6
      Conserved Domains (4) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
      cl26464
      Location:12941618
      Atrophin-1; Atrophin-1 family
    20. XM_021477429.2XP_021333104.1  protein scribble homolog isoform X20

      UniProtKB/TrEMBL
      A0A8M9Q7L7
      Conserved Domains (3) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
    21. XM_021477430.2XP_021333105.1  protein scribble homolog isoform X22

      UniProtKB/TrEMBL
      A0A8M9QGP9
      Conserved Domains (4) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
      cl25496
      Location:12981448
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    22. XM_068222183.1XP_068078284.1  protein scribble homolog isoform X27

      Related
      ENSDARP00000143072.1, ENSDART00000174212.2
    23. XM_068222185.1XP_068078286.1  protein scribble homolog isoform X29

    24. XM_068222187.1XP_068078288.1  protein scribble homolog isoform X31

    25. XM_021477432.2XP_021333107.1  protein scribble homolog isoform X25

      UniProtKB/TrEMBL
      A0A8M9PNN8
      Conserved Domains (4) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
      cl25751
      Location:12991610
      DUF4045; Domain of unknown function (DUF4045)
    26. XM_021477417.2XP_021333092.1  protein scribble homolog isoform X4

      UniProtKB/TrEMBL
      A0A8M9PNM3
      Conserved Domains (3) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
    27. XM_021477431.2XP_021333106.1  protein scribble homolog isoform X23

      UniProtKB/TrEMBL
      A0A8M9QBQ7
      Conserved Domains (4) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10041092
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
      cl26464
      Location:12361495
      Atrophin-1; Atrophin-1 family
    28. XM_068222182.1XP_068078283.1  protein scribble homolog isoform X26

    29. XM_068222186.1XP_068078287.1  protein scribble homolog isoform X30

    30. XM_068222189.1XP_068078290.1  protein scribble homolog isoform X33

      Related
      ENSDARP00000143155.1, ENSDART00000174204.2
    31. XM_068222188.1XP_068078289.1  protein scribble homolog isoform X32

    32. XM_021477418.2XP_021333093.1  protein scribble homolog isoform X5

      UniProtKB/TrEMBL
      A0A8M9Q183
      Conserved Domains (3) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:9831071
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
    33. XM_021477415.2XP_021333090.1  protein scribble homolog isoform X2

      UniProtKB/TrEMBL
      A0A8M9QGN8
      Conserved Domains (3) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10031091
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]
    34. XM_021477433.2XP_021333108.1  protein scribble homolog isoform X34

      UniProtKB/TrEMBL
      A0A8M9Q1A3
      Conserved Domains (3) summary
      COG4886
      Location:37306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd00992
      Location:10031091
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:1437
      LRR_RI; leucine-rich repeat [structural motif]