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    • Showing Current items.

    zgc:154075 zgc:154075 [ Danio rerio (zebrafish) ]

    Gene ID: 556929, updated on 28-Oct-2024

    Summary

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    Official Symbol
    zgc:154075provided by ZNC
    Official Full Name
    zgc:154075provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060929-910
    See related
    Ensembl:ENSDARG00000067630 AllianceGenome:ZFIN:ZDB-GENE-060929-910
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable nucleotide binding activity. [provided by Alliance of Genome Resources, Oct 2024]
    Orthologs
    all
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    Genomic context

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    See zgc:154075 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (20803270..20814485)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (20876879..20888659)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene si:ch211-112c15.8 Neighboring gene tetratricopeptide repeat domain 34 Neighboring gene ERBB receptor feedback inhibitor 1 Neighboring gene paired box 7b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A novel inducible mutagenesis screen enables to isolate and clone both embryonic and adult zebrafish mutants. Ma Z, et al. Sci Rep, 2017 Sep 4. PMID 28871129, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC154075

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC556929

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079964.1 → NP_001073433.1  uncharacterized protein LOC556929

      See identical proteins and their annotated locations for NP_001073433.1

      Status: PREDICTED

      Source sequence(s)
      BC124535
      UniProtKB/TrEMBL
      Q08BV8
      Related
      ENSDARP00000088151.3, ENSDART00000097381.4
      Conserved Domains (3) summary
      COG0673
      Location:9 → 208
      MviM; Predicted dehydrogenase [General function prediction only]
      pfam01408
      Location:7 → 128
      GFO_IDH_MocA; Oxidoreductase family, NAD-binding Rossmann fold
      cl21649
      Location:140 → 214
      GFO_IDH_MocA_C; Oxidoreductase family, C-terminal alpha/beta domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      20803270..20814485
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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