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    chaf1a chromatin assembly factor 1, subunit A (p150) [ Maylandia zebra (zebra mbuna) ]

    Gene ID: 101477382, updated on 8-Mar-2024

    Summary

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    Gene symbol
    chaf1a
    Gene description
    chromatin assembly factor 1, subunit A (p150)
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Maylandia zebra
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
    Orthologs
    human zebrafish all
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    Genomic context

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    See chaf1a in Genome Data Viewer
    Location:
    chromosome: LG23
    Exon count:
    16
    Annotation release Status Assembly LG Location
    104 current M_zebra_UMD2a (GCF_000238955.4) LG23 NC_036801.1 (5492939..5505845)
    101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531751.1 (225343..238457, complement)

    Linkage Group LG23 - NC_036801.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101477659 Neighboring gene secretory carrier membrane protein 4 Neighboring gene UBX domain protein 6 Neighboring gene UDP-N-acetylglucosamine pyrophosphorylase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CAF-1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromatin assembly factor 1 subunit A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference M_zebra_UMD2a Primary Assembly

    Genomic

    1. NC_036801.1 Reference M_zebra_UMD2a Primary Assembly

      Range
      5492939..5505845
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024798882.1 → XP_024654650.1  chromatin assembly factor 1 subunit A isoform X2

      Conserved Domains (4) summary
      pfam11600
      Location:274 → 430
      CAF-1_p150; Chromatin assembly factor 1 complex p150 subunit, N-terminal
      pfam12253
      Location:506 → 549
      CAF1A; Chromatin assembly factor 1 subunit A
      pfam15539
      Location:616 → 898
      CAF1-p150_C2; CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
      pfam15557
      Location:23 → 135
      CAF1-p150_N; CAF1 complex subunit p150, region binding to PCNA

    2. XM_012920153.3 → XP_012775607.2  chromatin assembly factor 1 subunit A isoform X1

      Conserved Domains (4) summary
      pfam11600
      Location:277 → 433
      CAF-1_p150; Chromatin assembly factor 1 complex p150 subunit, N-terminal
      pfam12253
      Location:509 → 552
      CAF1A; Chromatin assembly factor 1 subunit A
      pfam15539
      Location:619 → 901
      CAF1-p150_C2; CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
      pfam15557
      Location:23 → 135
      CAF1-p150_N; CAF1 complex subunit p150, region binding to PCNA

    3. XM_012920154.3 → XP_012775608.2  chromatin assembly factor 1 subunit A isoform X3

      Conserved Domains (4) summary
      pfam11600
      Location:255 → 411
      CAF-1_p150; Chromatin assembly factor 1 complex p150 subunit, N-terminal
      pfam12253
      Location:487 → 530
      CAF1A; Chromatin assembly factor 1 subunit A
      pfam15539
      Location:597 → 879
      CAF1-p150_C2; CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
      pfam15557
      Location:1 → 113
      CAF1-p150_N; CAF1 complex subunit p150, region binding to PCNA
    Nucleotide Protein
    Heading Accession and Version

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