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    retsatl retinol saturase (all-trans-retinol 13,14-reductase) like [ Danio rerio (zebrafish) ]

    Gene ID: 677660, updated on 12-Sep-2024

    Summary

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    Official Symbol
    retsatlprovided by ZNC
    Official Full Name
    retinol saturase (all-trans-retinol 13,14-reductase) likeprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-051113-252
    See related
    Ensembl:ENSDARG00000034989 AllianceGenome:ZFIN:ZDB-GENE-051113-252
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    RetSat B; wu:fi35b01; zgc:123334
    Summary
    Predicted to enable oxidoreductase activity. Is expressed in gut and ovary. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See retsatl in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (44994253..44998722)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (45193301..45197770)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene villin 1 Neighboring gene integrin, beta 2 Neighboring gene adenosine deaminase RNA specific B1b Neighboring gene anterior gradient 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Specificity of zebrafish retinol saturase: formation of all-trans-13,14-dihydroretinol and all-trans-7,8- dihydroretinol. Moise AR, et al. Biochemistry, 2007 Feb 20. PMID 17253779, Free PMC Article
    2. The earliest transcribed zygotic genes are short, newly evolved, and different across species. Heyn P, et al. Cell Rep, 2014 Jan 30. PMID 24440719
    3. Early depletion of primordial germ cells in zebrafish promotes testis formation. Tzung KW, et al. Stem Cell Reports, 2015 Jan 13. PMID 25434820, Free PMC Article
    4. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables oxidoreductase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    inactive all-trans-retinol 13,14-reductase
    Names
    inactive all-trans-13,14-dihydroretinol saturase B
    retinol saturase (all-trans-retinol 13,14-reductase)-like protein
    retinol saturase-like
    zRetSat B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040004.2 → NP_001035093.2  inactive all-trans-retinol 13,14-reductase precursor

      Status: PROVISIONAL

      Source sequence(s)
      BC107980
      UniProtKB/Swiss-Prot
      B0S6C5
      UniProtKB/TrEMBL
      A0A8M1N8E2
      Related
      ENSDARP00000115830.1, ENSDART00000141434.2
      Conserved Domains (2) summary
      COG1233
      Location:65 → 559
      COG1233; Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism]
      cl21454
      Location:65 → 579
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      44994253..44998722
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B0S6C5.1 GenPept UniProtKB/Swiss-Prot:B0S6C5

    Gene LinkOut

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