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    CLTC clathrin heavy chain [ Pyrgilauda ruficollis (rufous-necked snowfinch) ]

    Gene ID: 121361576, updated on 3-Aug-2024

    Summary

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    Gene symbol
    CLTC
    Gene description
    clathrin heavy chain
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pyrgilauda ruficollis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Passeridae; Pyrgilauda
    Orthologs
    human mouse all
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    Genomic context

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    See CLTC in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    100 current ASM1759013v1 (GCF_017590135.1) Unplaced Scaffold NW_024527599.1 (2612426..2642580, complement)

    NW_024527599.1Genomic Context describing neighboring genes Neighboring gene tubulin delta 1 Neighboring gene vacuole membrane protein 1 Neighboring gene peptidyl-tRNA hydrolase 2 Neighboring gene DEAH-box helicase 40 Neighboring gene uncharacterized LOC121361820

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024527599 Unplaced Scaffold Reference ASM1759013v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin light chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in clathrin coat assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in receptor-mediated endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin coat of coated pit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of clathrin coat of trans-Golgi network vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of clathrin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in clathrin-coated endocytic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular exosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in spindle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    clathrin heavy chain 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pyrgilauda ruficollis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1759013v1 Primary Assembly

    Genomic

    1. NW_024527599.1 Reference ASM1759013v1 Primary Assembly

      Range
      2612426..2642580 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041482403.1 → XP_041338337.1  clathrin heavy chain 1 isoform X2

      Conserved Domains (2) summary
      smart00299
      Location:1353 → 1495
      CLH; Clathrin heavy chain repeat homology
      sd00006
      Location:1184 → 1210
      TPR; TPR repeat [structural motif]

    2. XM_041482402.1 → XP_041338336.1  clathrin heavy chain 1 isoform X1

      Conserved Domains (2) summary
      smart00299
      Location:1353 → 1495
      CLH; Clathrin heavy chain repeat homology
      sd00006
      Location:1184 → 1210
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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