U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC122299941 probable disease resistance RPP8-like protein 2 [ Carya illinoinensis ]

    Gene ID: 122299941, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC122299941
    Gene description
    probable disease resistance RPP8-like protein 2
    Locus tag
    CIPAW_16G082000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carya illinoinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC122299941 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 16 NC_056767.1 (22991063..22997072, complement)

    Chromosome 16 - NC_056767.1Genomic Context describing neighboring genes Neighboring gene plant cysteine oxidase 3 Neighboring gene putative disease resistance protein At1g50180 Neighboring gene probable disease resistance RPP8-like protein 2 Neighboring gene cytochrome P450 84A1-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_056767.1 Chromosome 16 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable disease resistance RPP8-like protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.illinoinensisPawnee_v1 Primary Assembly

    Genomic

    1. NC_056767.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

      Range
      22991063..22997072 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043110427.1 → XP_042966361.1  probable disease resistance RPP8-like protein 2

      UniProtKB/TrEMBL
      A0A922A0X7
      Conserved Domains (3) summary
      COG4886
      Location:505 → 758
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:2 → 122
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:534 → 553
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.