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    LOC106428722 ubiquitin domain-containing protein DSK2b [ Brassica napus (rape) ]

    Gene ID: 106428722, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC106428722
    Gene description
    ubiquitin domain-containing protein DSK2b
    Locus tag
    HID58_024907
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica napus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    Location:
    chromosome: A7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current Da-Ae (GCF_020379485.1) A7 NC_063440.1 (2759583..2762962)
    101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A10 NC_027766.2 (14592559..14595876)

    Chromosome A7 - NC_063440.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g17210-like Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC125576708 Neighboring gene zinc finger protein ZAT2-like Neighboring gene small nucleolar RNA R71

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin domain-containing protein DSK2b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Da-Ae Primary Assembly

    Genomic

    1. NC_063440.1 Reference Da-Ae Primary Assembly

      Range
      2759583..2762962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013869476.3 → XP_013724930.1  ubiquitin domain-containing protein DSK2b isoform X1

      UniProtKB/TrEMBL
      A0A816YAC8
      Conserved Domains (3) summary
      smart00727
      Location:378 → 413
      STI1; Heat shock chaperonin-binding motif
      cd14399
      Location:507 → 546
      UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins
      cl00155
      Location:16 → 87
      UBQ; Ubiquitin-like proteins

    2. XM_013869477.3 → XP_013724931.1  ubiquitin domain-containing protein DSK2b isoform X2

      UniProtKB/TrEMBL
      A0A816YAC8
      Conserved Domains (4) summary
      smart00727
      Location:378 → 413
      STI1; Heat shock chaperonin-binding motif
      smart00213
      Location:16 → 85
      UBQ; Ubiquitin homologues
      cd14399
      Location:505 → 544
      UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins
      cl00155
      Location:16 → 87
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein
    Heading Accession and Version

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