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    nitr1c novel immune-type receptor 1c [ Danio rerio (zebrafish) ]

    Gene ID: 60645, updated on 25-Apr-2024

    Summary

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    Official Symbol
    nitr1cprovided by ZNC
    Official Full Name
    novel immune-type receptor 1cprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-001106-4
    See related
    AllianceGenome:ZFIN:ZDB-GENE-001106-4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    nitr1; nitr1.2; nitr1.16; nitr1.21; nitr1.59; nitr1.63; SI:dZ169I8.5
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See nitr1c in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (17472175..17474070)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (17220202..17222097)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene novel immune-type receptor 1a Neighboring gene novel immune-type receptor 1b Neighboring gene novel immune-type receptor 2c, pseudogene Neighboring gene novel immune-type receptor 1d

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of the zebrafish model: from development to immunity and infectious disease. Phelps HA, et al. Zebrafish, 2005. PMID 18248169
    2. Developmental and tissue-specific expression of NITRs. Yoder JA, et al. Immunogenetics, 2010 Feb. PMID 20012603, Free PMC Article
    3. The medaka novel immune-type receptor (NITR) gene clusters reveal an extraordinary degree of divergence in variable domains. Desai S, et al. BMC Evol Biol, 2008 Jun 19. PMID 18565225, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    novel immune-type receptor 1c
    Names
    immune-type receptor
    novel immune-type receptor 1
    novel immune-type receptor 1.16
    novel immune-type receptor 1.2
    novel immune-type receptor 1.21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198350.2 → NP_938164.2  novel immune-type receptor 1c precursor

      Status: VALIDATED

      Source sequence(s)
      CU179759
      UniProtKB/TrEMBL
      F1QT68, Q8UV99
      Conserved Domains (1) summary
      pfam07686
      Location:147 → 244
      V-set; Immunoglobulin V-set domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      17472175..17474070
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477731.1 → XP_021333406.1  novel immune-type receptor 1c

      Conserved Domains (1) summary
      pfam07686
      Location:147 → 244
      V-set; Immunoglobulin V-set domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394681.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      250776..252671
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017356988.1 → XP_017212477.1  novel immune-type receptor 1c

      UniProtKB/TrEMBL
      Q8UV99
      Conserved Domains (1) summary
      pfam07686
      Location:147 → 244
      V-set; Immunoglobulin V-set domain
    Nucleotide Protein
    Heading Accession and Version

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