nitr2b novel immune-type receptor 2b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: nitr2bprovided by ZNC
Official Full Name: novel immune-type receptor 2bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-001106-6
See related: Ensembl:ENSDARG00000000460 AllianceGenome:ZFIN:ZDB-GENE-001106-6
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: nitr2; nitr2.1; nitr2.2; nitr2.3; nitr2.5; nitr2.8; nitr2.16; nitr2.21
Summary: Predicted to be involved in response to bacterium. Predicted to be located in plasma membrane. Orthologous to human SIRPB2 (signal regulatory protein beta 2). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 7

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (17442796..17447456)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (17190828..17194957)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in response to bacterium	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: novel immune-type receptor 2b

Names: novel immune-type receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_131649.2 → NP_571724.1 novel immune-type receptor 2b precursor

See identical proteins and their annotated locations for NP_571724.1

Status: VALIDATED

Source sequence(s)

CU179759

UniProtKB/TrEMBL

A0A8N7XJ55, B3DHG2, F1QT58, Q90Z92

Related

ENSDARP00000060382.4, ENSDART00000060383.5

Conserved Domains (3) summary

cd00099
Location:29 → 129

IgV; Immunoglobulin variable domain (IgV)

smart00410
Location:28 → 129

IG_like; Immunoglobulin like

cl11960
Location:149 → 232

Ig; Immunoglobulin domain