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    zgc:101783 zgc:101783 [ Danio rerio (zebrafish) ]

    Gene ID: 447883, updated on 28-Oct-2024

    Summary

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    Official Symbol
    zgc:101783provided by ZNC
    Official Full Name
    zgc:101783provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040912-48
    See related
    Ensembl:ENSDARG00000045824 AllianceGenome:ZFIN:ZDB-GENE-040912-48
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and regulation of cell adhesion. Predicted to be located in extracellular region and membrane. Orthologous to human CBLL1 (Cbl proto-oncogene like 1). [provided by Alliance of Genome Resources, Oct 2024]
    Orthologs
    all
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    Genomic context

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    See zgc:101783 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (19733727..19739966)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (19635760..19642218)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene myxovirus (influenza virus) resistance H Neighboring gene myxovirus (influenza virus) resistance G Neighboring gene E3 ubiquitin-protein ligase Hakai Neighboring gene myxovirus (influenza virus) resistance D Neighboring gene cadherin EGF LAG seven-pass G-type receptor 1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin protein ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of cell adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC447883

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004622.1 → NP_001004622.1  uncharacterized protein LOC447883

      See identical proteins and their annotated locations for NP_001004622.1

      Status: PREDICTED

      Source sequence(s)
      BC081404
      UniProtKB/TrEMBL
      Q66IC7
      Related
      ENSDARP00000067353.3, ENSDART00000067354.4
      Conserved Domains (1) summary
      cd13940
      Location:68 → 238
      ILEI_FAM3C; Interleukin-like EMT inducer

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      19733727..19739966
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005163005.5 → XP_005163062.1  uncharacterized protein LOC447883 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BA18
      Conserved Domains (1) summary
      cd13940
      Location:81 → 251
      ILEI_FAM3C; Interleukin-like EMT inducer

    2. XM_005163006.5 → XP_005163063.1  uncharacterized protein LOC447883 isoform X2

      UniProtKB/TrEMBL
      A0A8M2BA50, F1R0K5
      Conserved Domains (1) summary
      cd13940
      Location:68 → 238
      ILEI_FAM3C; Interleukin-like EMT inducer
    Nucleotide Protein
    Heading Accession and Version

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