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    Tex30 testis expressed 30 [ Mus musculus (house mouse) ]

    Gene ID: 75623, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Tex30provided by MGI
    Official Full Name
    testis expressed 30provided by MGI
    Primary source
    MGI:MGI:1922873
    See related
    Ensembl:ENSMUSG00000026049 AllianceGenome:MGI:1922873
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700029F09Rik; 3110030D08Rik
    Summary
    Is expressed in diencephalon lateral wall ventricular layer; midbrain ventricular layer; and telencephalon ventricular layer. Orthologous to human TEX30 (testis expressed 30). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 23.7), placenta adult (RPKM 9.9) and 12 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Tex30 in Genome Data Viewer
    Location:
    1 C1.1; 1 23.54 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (44125773..44141650, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (44086613..44102491, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene methyltransferase 21C, AARS1 lysine Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:44099123-44099276 Neighboring gene coiled-coil domain containing 168 Neighboring gene protein O-glucosyltransferase 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:44176158-44176267 Neighboring gene basic, immunoglobulin-like variable motif containing Neighboring gene STARR-positive B cell enhancer mm9_chr1:44204561-44204862 Neighboring gene excision repair cross-complementing rodent repair deficiency, complementation group 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. DYRK1a mediates BAFF-induced noncanonical NF-κB activation to promote autoimmunity and B-cell leukemogenesis. Li Y, et al. Blood, 2021 Dec 9. PMID 34255829, Free PMC Article
    2. ALS-linked loss of Cyclin-F function affects HSP90. Siebert A, et al. Life Sci Alliance, 2022 Sep 16. PMID 36114006, Free PMC Article
    3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    4. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
    5. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC118304

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    testis-expressed protein 30
    Names
    testis-expressed sequence 30 protein

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356296.1 → NP_001343225.1  testis-expressed protein 30

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AC123800, BC099557, BQ032225
      Consensus CDS
      CCDS48249.1
      UniProtKB/Swiss-Prot
      Q3TUU5, Q4KKZ6, Q9D9T9
      Related
      ENSMUSP00000115068.2, ENSMUST00000133677.8
      Conserved Domains (1) summary
      cl21494
      Location:32 → 219
      Abhydrolase; alpha/beta hydrolases

    2. NM_001356297.1 → NP_001343226.1  testis-expressed protein 30

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AC123800
      Consensus CDS
      CCDS48249.1
      UniProtKB/Swiss-Prot
      Q3TUU5, Q4KKZ6, Q9D9T9
      Related
      ENSMUSP00000120928.2, ENSMUST00000150911.8
      Conserved Domains (1) summary
      cl21494
      Location:32 → 219
      Abhydrolase; alpha/beta hydrolases

    3. NM_029368.2 → NP_083644.1  testis-expressed protein 30

      See identical proteins and their annotated locations for NP_083644.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) repesents the longest transcript. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AC123800, AK160565, BQ032225
      Consensus CDS
      CCDS48249.1
      UniProtKB/Swiss-Prot
      Q3TUU5, Q4KKZ6, Q9D9T9
      Related
      ENSMUSP00000027215.6, ENSMUST00000027215.12
      Conserved Domains (1) summary
      cl21494
      Location:32 → 219
      Abhydrolase; alpha/beta hydrolases

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      44125773..44141650 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011238615.3 → XP_011236917.1  testis-expressed protein 30 isoform X2

      See identical proteins and their annotated locations for XP_011236917.1

      UniProtKB/Swiss-Prot
      Q3TUU5
      Conserved Domains (1) summary
      cl21494
      Location:57 → 178
      Abhydrolase; alpha/beta hydrolases

    2. XM_006496315.5 → XP_006496378.1  testis-expressed protein 30 isoform X1

      See identical proteins and their annotated locations for XP_006496378.1

      UniProtKB/Swiss-Prot
      Q3TUU5, Q4KKZ6, Q9D9T9
      Conserved Domains (1) summary
      cl21494
      Location:32 → 219
      Abhydrolase; alpha/beta hydrolases

    3. XM_011238616.3 → XP_011236918.1  testis-expressed protein 30 isoform X2

      See identical proteins and their annotated locations for XP_011236918.1

      UniProtKB/Swiss-Prot
      Q3TUU5
      Conserved Domains (1) summary
      cl21494
      Location:57 → 178
      Abhydrolase; alpha/beta hydrolases

    4. XM_036154146.1 → XP_036010039.1  testis-expressed protein 30 isoform X1

      UniProtKB/Swiss-Prot
      Q3TUU5, Q4KKZ6, Q9D9T9
      Conserved Domains (1) summary
      cl21494
      Location:32 → 219
      Abhydrolase; alpha/beta hydrolases

    5. XM_036154150.1 → XP_036010043.1  testis-expressed protein 30 isoform X3

      Conserved Domains (1) summary
      cl21494
      Location:23 → 144
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3TUU5.1 GenPept UniProtKB/Swiss-Prot:Q3TUU5

    Gene LinkOut

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