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    LOC4341379 uncharacterized LOC4341379 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341379, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4341379
    Gene description
    uncharacterized LOC4341379
    Locus tag
    OSNPB_060581300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 24.4), leaves after flowering (RPKM 22.7) and 6 other tissues See more
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    Genomic context

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    See LOC4341379 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (22699048..22705076)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341377 Neighboring gene protein NRT1/ PTR FAMILY 4.6 Neighboring gene receptor kinase-like protein Xa21 Neighboring gene uncharacterized LOC9268915

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4341379
    Names
    Os06g0581300
    P0566A10.33-1
    P0566A10.33-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      22699048..22705076
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785586.2 → XP_015641072.1  uncharacterized protein LOC4341379 isoform X1

      UniProtKB/TrEMBL
      B8B432, B9FTW8, Q0DBC1, Q5VPL8
      Conserved Domains (1) summary
      pfam07343
      Location:1 → 236
      DUF1475; Protein of unknown function (DUF1475)

    2. XM_015785591.2 → XP_015641077.1  uncharacterized protein LOC4341379 isoform X3

      UniProtKB/TrEMBL
      A0A0P0WYJ6, Q5VPL7
      Conserved Domains (1) summary
      pfam07343
      Location:1 → 234
      DUF1475; Protein of unknown function (DUF1475)

    3. XM_015785590.2 → XP_015641076.1  uncharacterized protein LOC4341379 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WYJ6, Q5VPL7
      Conserved Domains (1) summary
      pfam07343
      Location:1 → 236
      DUF1475; Protein of unknown function (DUF1475)
    Nucleotide Protein
    Heading Accession and Version

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