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    hpf ribosome hibernation promotion factor [ Bacillus inaquosorum ]

    Gene ID: 76980015, updated on 22-Apr-2024

    Summary

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    Gene symbol
    hpf
    Gene description
    ribosome hibernation promotion factor
    Locus tag
    M1M80_RS18340
    Gene type
    protein coding
    Organism
    Bacillus inaquosorum (strain: A65.1, nat-host: Glycyrrhiza uralensis Fisch)
    Lineage
    Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus
    Also known as
    yvyD
    Old locus tag
    M1M80_18340
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    Genomic context

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    NZ_CP096592.1Genomic Context describing neighboring genes Neighboring gene peptide chain release factor 2 Neighboring gene preprotein translocase subunit SecA Neighboring gene hypothetical protein Neighboring gene flagellar protein FliT Neighboring gene flagellar export chaperone FliS

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP096592.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. Beckert B, et al. EMBO J, 2017 Jul 14. PMID 28468753, Free PMC Article
    2. The glucose and nitrogen starvation response of Bacillus licheniformis. Voigt B, et al. Proteomics, 2007 Feb. PMID 17274076
    3. Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis. Eymann C, et al. J Bacteriol, 2002 May. PMID 11948165, Free PMC Article
    4. The yvyD gene of Bacillus subtilis is under dual control of sigmaB and sigmaH. Drzewiecki K, et al. J Bacteriol, 1998 Dec. PMID 9852014, Free PMC Article
    5. Expression of a small (p)ppGpp synthetase, YwaC, in the (p)ppGpp(0) mutant of Bacillus subtilis triggers YvyD-dependent dimerization of ribosome. Tagami K, et al. Microbiologyopen, 2012 Jun. PMID 22950019, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    ribosome hibernation promotion factor

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP096592.1 Reference assembly

      Range
      3615482..3616051 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_003235436.1 MULTISPECIES: ribosome hibernation promotion factor [Bacillus]

      See identical proteins and their annotated locations for WP_003235436.1

      UniProtKB/TrEMBL
      A0A2M8SVB9, A0A9Q4EU88, A0A9W5LL72
      Conserved Domains (2) summary
      COG1544
      Location:1 → 111
      RaiA; Ribosome-associated translation inhibitor RaiA [Translation, ribosomal structure and biogenesis]
      pfam16321
      Location:133 → 184
      Ribosom_S30AE_C; Sigma 54 modulation/S30EA ribosomal protein C-terminus
    Nucleotide Protein
    Heading Accession and Version