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77 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Arabidopsis thaliana		BED
GSE28398	Histone modifications of Arabidopsis thaliana (aerial tissue)	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	12	BED SRA Run Selector	Chongyuan Luo	Jun 06, 2011
GSE34241	RNA-seq-based analysis of the pathogen-induced defense transcriptome in Arabidopsis	Expression profiling by high throughput sequencing	Arabidopsis thaliana	4	BED CSV SRA Run Selector	Stuart Stephen	Jun 01, 2012
GSE34318	Mapping regulatory elements using signatures of open chromatin in Arabidopsis thaliana	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	14	BAM BED TXT SRA Run Selector	Yufeng Wu	Jul 06, 2012
GSE35288	Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq	Expression profiling by high throughput sequencing	Arabidopsis thaliana	6	BED TXT SRA Run Selector	Chad E. Niederhuth	Jan 14, 2013
GSE38113	Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata	Expression profiling by genome tiling array Expression profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana	7	BED CEL	Felix Ott	May 22, 2012
GSE39051	Integrative genome-wide analysis reveals HLP1, a novel RNA-binding protein， regulates plant flowering by targeted alternative polyadenylation	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	8	BED WIG SRA Run Selector	xiaofeng cao	Jun 30, 2015
GSE40209	Regulatory impact of RNA secondary structure across the Arabidopsis thaliana transcriptome	Expression profiling by high throughput sequencing	Arabidopsis thaliana	2	BED TXT SRA Run Selector	Fan Li	Nov 15, 2012
GSE45213	Genome-wide analysis of SPL7 regulated genes in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	BED TXT SRA Run Selector	xin zhao	Apr 15, 2014
GSE48770	Arabidopsis phytochrome A directly targets numerous promoters for individualized modulation of genes in wide range of pathways	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	10	BED	Bosheng Li	May 06, 2014
GSE50636	Genome-wide profiling of H3K4me3 and H3K27me3 enrichment and mRNA levels in young leaves of Arabidopsis thaliana	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	BED BEDGRAPH TXT SRA Run Selector	François ROUDIER	Jan 27, 2014
GSE52814	Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	56	BED TXT	Mary Gehring	Jul 08, 2014
GSE58084	The photoreceptor chaperone FHY1 has an independent role in gene modulation and plant development under far-red light	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	10	BED	Bosheng Li	Aug 04, 2014
GSE58974	Global analysis of the RNA-protein interaction and RNA secondary structure landscapes of the Arabidopsis nucleus	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	10	BED TXT SRA Run Selector	Sager Jayesh Gosai	Dec 16, 2014
GSE60183	Gene expression in the epidermis including guard cells of phot1 phot2 and pGC1::SOC1-GFP/phot1 phot2	Expression profiling by high throughput sequencing	Arabidopsis thaliana	6	BED SRA Run Selector	Norihito Nakamichi	Feb 04, 2015
GSE66224	Chemical modifications mark alternatively spliced and actively degrading messenger RNAs in Arabidopsis and humans	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana Homo sapiens	12	BED SRA Run Selector	Lee Elliott Vandivier	Oct 31, 2015
GSE67322	Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cis-regulatory Elements	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	29	BED TXT XLS SRA Run Selector	yijing zhang	Jan 19, 2016
GSE69904	Arginine methylation regulates widespread alternative polyadenylation	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	11	BED WIG SRA Run Selector	xiaofeng cao	Jan 01, 2019
GSE72736	Genome-wide profiling of SWI/SNF chromatin remodeler BRAHMA and Histone H3 lysine demethyalse Relative of Early Flowering 6 (REF6) in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	26	BED	Lei Gao	Mar 29, 2016
GSE73972	ATX3, ATX4, and ATX5 encode putative H3K4 methyltransferases and are critical for plant development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	12	BED TXT WIG SRA Run Selector	Yan He	Jun 07, 2017
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis lyrata Arabidopsis thaliana Brassica oleracea Brassica rapa Capsella rubella Eutrema salsugineum	44	BED TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2016