GEO Browser - GEO

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238 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Arabidopsis thaliana		BED
GSE15725	Chromosomal duplication in the grandifolia-D mutants of Arabidopsis thaliana, tiling array data	Genome variation profiling by genome tiling array	Arabidopsis thaliana	1	BAR BED CEL	Nathalie Gonzalez	Jun 02, 2009
GSE15726	Chromosomal duplication in the grandifolia-D mutants of Arabidopsis thaliana	Expression profiling by array Genome variation profiling by genome tiling array	Arabidopsis thaliana	13	BAR BED CEL	Nathalie Gonzalez	Jun 02, 2009
GSE16940	An effective approach for identification of in vivo protein–DNA binding sites from paired-end ChIP-Seq data	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	1	BED TXT SRA Run Selector	dabing zhang	Jun 04, 2010
GSE21301	Orchestration of development by the bifunctional transcription factor, APETALA2	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED GFF SRA Run Selector	Felix Ott	Apr 13, 2010
GSE21781	Mapping origins of replication in Arabidopsis thaliana: Examination of BrdU labeled DNA and unlabeled DNA in one cell type	Other	Arabidopsis thaliana	4	BED TXT SRA Run Selector	Hume Stroud	Nov 06, 2011
GSE21828	Mapping origins of replication in Arabidopsis thaliana	Other Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana	5	BAR BED CEL TXT	Hume Stroud	Feb 06, 2011
GSE22276	Genome-wide maps of histone modifications in Arabidopsis thaliana	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Arabidopsis thaliana	20	BED GPR SRA Run Selector	Misook Ha	Feb 02, 2011
GSE23774	Genome wide BZR1 binding site analysis in Arabidopsis	Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana	1	BAR BED BPMAP CEL TXT	Yu Sun	Dec 31, 2010
GSE24568	A biophysical DNA binding model for the LEAFY transcription factor reveals the evolutionary fluidity of its binding sites	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED TXT SRA Run Selector	Felix Ott	May 13, 2011
GSE25022	sRNA populations of 2 week old seedlings from Arabidopsis ecotypes C24, Ler, and their two reciprocal F1 hybrids	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	4	BED TXT SRA Run Selector	Michael Groszmann	Jan 12, 2011
GSE25135	Brassinosteroid (BR) plant hormone signaling	Genome binding/occupancy profiling by genome tiling array Expression profiling by array	Arabidopsis thaliana	10	BAR BED BPMAP CEL TXT	Yu Sun	Dec 31, 2010
GSE26722	Role of class III HD‐ZIP transcription factors in shade signaling	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED TXT SRA Run Selector	Stephan Wenkel	Jun 01, 2012
GSE28060	LEAFY target genes reveal a link between flower development and biotic stimulus response (I)	Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana	2	BAR BED CEL	Cara Michele Winter	May 11, 2011
GSE28061	LEAFY target genes reveal a link between flower development and biotic stimulus response (II)	Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana	2	BAR BED CEL	Cara Michele Winter	May 11, 2011
GSE28063	LEAFY target genes reveal a link between flower development and biotic stimulus response	Genome binding/occupancy profiling by genome tiling array Expression profiling by array	Arabidopsis thaliana	12	BAR BED CEL	Cara Michele Winter	May 11, 2011
GSE28398	Histone modifications of Arabidopsis thaliana (aerial tissue)	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	12	BED SRA Run Selector	Chongyuan Luo	Jun 06, 2011
GSE30711	ChIP-Seq data from Arabidopsis thaliana under dark and far-red light	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED SRA Run Selector	Bosheng Li	Aug 02, 2011
GSE30713	Genome-wide Binding Site Analysis of FAR-RED ELONGATED HYPOCOTYL 3 Reveals Its Novel Function in Arabidopsis Development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Arabidopsis thaliana	18	BED CEL	Bosheng Li	Dec 31, 2011
GSE34241	RNA-seq-based analysis of the pathogen-induced defense transcriptome in Arabidopsis	Expression profiling by high throughput sequencing	Arabidopsis thaliana	4	BED CSV SRA Run Selector	Stuart Stephen	Jun 01, 2012
GSE34318	Mapping regulatory elements using signatures of open chromatin in Arabidopsis thaliana	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	14	BAM BED TXT SRA Run Selector	Yufeng Wu	Jul 06, 2012