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89 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			BEDPE
GSE223058	TFIIIC and MYCN link the three-dimensional chromatin structure of promoters to transcription termination of stalled RNA polymerase	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	62	BEDGRAPH BEDPE HIC	Martin Eilers	Jul 15, 2024
GSE230594	Oncogenic roles of SWI/SNF chromatin remodeling factors: therapeutic targets in T-cell acute lymphoblastic leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	88	BED BEDPE BROADPEAK BW NARROWPEAK	Tze King Tan	Jul 02, 2024
GSE214916	Enhancer engagement sustains oncogenic transformation and progression of B-cell precursor acute lymphoblastic leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	57	BEDPE BW MTX NARROWPEAK RESULTS TSV	Stefano Di Giovenale	Jun 27, 2024
GSE247254	YY1 controlled regulatory connectivity and transcription are influenced by the cell cycle	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	121	BED BEDPE BW MCOOL TXT	Jessica C Lam	Jun 17, 2024
GSE249351	Specific multivalent molecules boost CRISPR-mediated transcriptional activation via optimal cis-trans interaction and functional chromatin looping.	Other Expression profiling by high throughput sequencing	Homo sapiens	12	BEDGRAPH BEDPE TXT	Rui Chen	Jun 01, 2024
GSE212568	Landscape of TFs binding in mouse early embryos	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	57	BED BEDPE BW	Gran Young	Mar 03, 2024
GSE214438	Age-associated chromatin re-organization in progenitor B cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	76	BED BEDPE TXT	Yaqiang Cao	Mar 01, 2024
GSE230526	Aberrant non-canonical NF-κB signalling reprograms the epigenome landscape to drive oncogenic transcriptomes in multiple myeloma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	90	BEDPE BW COOL NARROWPEAK	Yinghui Li	Mar 01, 2024
GSE237916	Regulation of T helper cell differentiation by the interplay between histone modification and chromatin interaction	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	197	BEDPE BW DIFF TXT	Yaqiang Cao	Mar 01, 2024
GSE211610	Oncogenic enhancers prime quiescent metastatic cells to escape NK immune surveillance by eliciting a transcriptional memory	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	64	BEDPE BW	CIBIO Zippo	Feb 02, 2024
GSE249578	EWS::FLI cooperatively binds at GGAA microsatellites via DBD-a4 helix	Other Expression profiling by high throughput sequencing	Homo sapiens	45	BED BEDPE BW HIC NARROWPEAK TSV TXT	Ariunaa Bayanjargal	Feb 01, 2024
GSE221884	Single-cell Circle-seq unveils diversity and cell specificity of circular DNA in single cells	Expression profiling by high throughput sequencing Other	Homo sapiens	344	BED BEDPE RESULTS	Jinxin Phaedo Chen	Jan 02, 2024
GSE250589	Distinct transcriptomic and epigenomic responses of mature oligodendrocytes during disease progression in a mouse model of multiple sclerosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	38	BEDPE BW H5 RDS TBI TSV	Bastien Hervé	Dec 20, 2023
GSE236182	Kdm1a safeguards the topological boundaries of PRC2-repressed genes and prevents aging-related euchromatinization in neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	37	BEDGRAPH BEDPE BIGWIG BW HIC TXT WIG	Sergio Niñerola	Dec 04, 2023
GSE212910	RNA-seq and Chromatin accessibility and conformation maps of human kidney cortex and medulla	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	16	BEDPE BW HIC	Stefan Haug	Nov 22, 2023
GSE214796	ASCL1 a pioneer factor that induces subtype switching and characterizes adrenergic neuroblastoma	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	44	BED BEDPE BW NARROWPEAK	Tze King Tan	Nov 21, 2023
GSE181215	Requirement for TP73 in cancer cell maintenance and genetic alterations originating from its intragenic super-enhancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	25	BED BEDPE BW NARROWPEAK TXT	Tze King Tan	Nov 20, 2023
GSE225941	Regulatory mechanisms and context-dependent roles of TAL1 in TALL	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	75	BED BEDGRAPH BEDPE BW NARROWPEAK TXT	Tze King Tan	Nov 20, 2023
GSE236637	ZNF143 deletion alters enhancer/promoter looping and CTCF/cohesin geometry	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	33	BEDGRAPH BEDPE BW MCOOL NARROWPEAK	Mo Zhang	Nov 07, 2023
GSE229683	Stage-specific dynamic reorganization of genome topology shapes transcriptional neighborhoods in developing human retinal organoids	Expression profiling by high throughput sequencing Other	Homo sapiens	20	BED BEDGRAPH BEDPE HIC MCOOL TXT	Zachary A Batz	Nov 03, 2023