NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE214916 Query DataSets for GSE214916
Status Public on Jun 27, 2024
Title Enhancer engagement sustains oncogenic transformation and progression of B-cell precursor acute lymphoblastic leukemia
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary Numerous evidence report that non-genetic-driven events such as enhancer reprogramming promotes neoplastic transformation and strongly contribute to the phenotypical heterogeneity of cancers as much as genetic variation. In this study, we investigated the role of enhancers in sustaining oncogenic transformation in Paediatric B-cell Acute Lymphoblastic Leukemia (ALL-B), a type of cancer caused by the accumulation of lymphoid progenitor cells in the bone marrow.
 
Overall design Analysis of ATACseq and RNAseq across the type-B acute lymphoblasitc leukemia cancer progression. Four cancer stages are considered: Healthy, Onset, Remission and Relapse

scMultiomics samples profiled through 10xGenomics
 
Contributor(s) Corleone G, Sorino C, Caforio M, Di Giovenale S, De Nicola F, Bertaina V, Pitisci A, Cortile C, Locatelli F, Folgiero V, Fanciulli M
Citation(s) 38926853
Submission date Oct 06, 2022
Last update date Jun 28, 2024
Contact name Stefano Di Giovenale
E-mail(s) stefano.digiovenale@ifo.it
Organization name IRCCS National Cancer Institute Regina Elena
Street address Via Elio Chianesi, 53
City Rome
ZIP/Postal code 00144
Country Italy
 
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (57)
GSM6617857 patient_7_Healthy_ATACseq
GSM6617858 patient_8_Healthy_ATACseq
GSM6617859 patient_9_Healthy_ATACseq
Relations
BioProject PRJNA887733

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE214916_RAW.tar 5.1 Gb (http)(custom) TAR (of BEDPE, BW, NARROWPEAK, RESULTS, TSV)
GSE214916_sample_E1_barcodes.tsv.gz 13.1 Kb (ftp)(http) TSV
GSE214916_sample_E1_features.tsv.gz 2.9 Mb (ftp)(http) TSV
GSE214916_sample_E1_matrix.mtx.gz 136.9 Mb (ftp)(http) MTX
GSE214916_sample_E2_barcodes.tsv.gz 16.4 Kb (ftp)(http) TSV
GSE214916_sample_E2_features.tsv.gz 3.0 Mb (ftp)(http) TSV
GSE214916_sample_E2_matrix.mtx.gz 137.6 Mb (ftp)(http) MTX
GSE214916_sample_R1_barcodes.tsv.gz 28.6 Kb (ftp)(http) TSV
GSE214916_sample_R1_features.tsv.gz 3.3 Mb (ftp)(http) TSV
GSE214916_sample_R1_matrix.mtx.gz 192.4 Mb (ftp)(http) MTX
GSE214916_sample_R2_barcodes.tsv.gz 29.2 Kb (ftp)(http) TSV
GSE214916_sample_R2_features.tsv.gz 3.1 Mb (ftp)(http) TSV
GSE214916_sample_R2_matrix.mtx.gz 172.9 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap