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520 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					BEDPE
GSE185434	Chromatin reorganization during myoblast differentiation involves the caspase-dependent removal of SATB2 [Hi-C]	Other	Mus musculus	4	ZIP BEDPE SRA Run Selector	Lynn Megeney	Mar 31, 2022
GSE160768	A Quantitative Epistasis Framework For Interrogating the Network of Enhancers	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	58	XLSX BEDPE SRA Run Selector	xueqiu lin	Aug 12, 2022
GSE185125	EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma (Hi-C)	Other	Homo sapiens	6	XLSX TXT HIC BW BEDPE BEDGRAPH BED SRA Run Selector	Iftekhar Ahmed Showpnil	Aug 15, 2022
GSE218168	GAGA-Associated Factor Fosters Loop Formation in the Drosophila Genome	Expression profiling by high throughput sequencing Other	Drosophila melanogaster	30	XLSX TXT COOL BIGWIG BEDPE	Michael Levine	Feb 14, 2023
GSE268050	Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample	Other Third-party reanalysis	Bos taurus Elephas maximus indicus Equus asinus Homo sapiens Mammuthus primigenius	136	XLSX TXT SW HIC FASTA BEDPE BEDGRAPH BED	Olga Dudchenko	May 22, 2024
GSE87254	Trac-looping measures genome structure and chromatin accessibility	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	34	XLS TXT BEDPE BEDGRAPH SRA Run Selector	Keji Zhao	Jul 12, 2018
GSE146901	3D Genome Analysis Identifies Enhancer Hijacking Mechanism for High-Risk Factors in Human T-Lineage Acute Lymphoblastic Leukemial (T-ALL)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	52	XLS TXT HIC H5 BW BEDPE SRA Run Selector	Hong Wu	Mar 20, 2021
GSE157339	Architectural role of cell-fate-instructive transcription factor MyoD in orchestrating 3D genome organization in muscle cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	122	XLS TXT HIC H5 BW BEDPE	Yong Zhang	May 01, 2021
GSE222183	Combinatorial transcription factor binding encodes cis-regulatory wiring of forebrain GABAergic neurogenesis	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	11	XLS BEDPE	Alex S. Nord	Sep 11, 2023
GSE92881	Chromosome loop control of oncogenic MYC produces a common vulnerability in diverse cancers	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	24	WIG BEDPE	Richard A Young	Dec 24, 2016
GSE162609	ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	185	WIG BW BEDPE	Jinxiu Li	Jan 01, 2023
GSE169088	3D genomics across the tree of life reveals condensin II as a determinant of architecture type	Other	Acropora millepora Aedes aegypti Agaricus bisporus Aplysia californica Arachis hypogaea Branchiostoma lanceolatum Caenorhabditis elegans Chiloscyllium punctatum Ciona intestinalis Clonorchis sinensis Cristatella mucedo Culex quinquefasciatus Drosophila melanogaster Gallus gallus Homo sapiens Hypsibius dujardini Lethenteron camtschaticum Muntiacus muntjak Muntiacus reevesi Notamacropus eugenii Pleurobrachia bachei Pygocentrus nattereri Python bivittatus Saccharomyces cerevisiae Strongylocentrotus purpuratus Triticum aestivum Xenopus laevis	32	WIG VCF HIC FASTA BEDPE SRA Run Selector	Olga Dudchenko	Apr 23, 2021
GSE186599	TULIPs decorate the three-dimensional genome of PFA ependymoma	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	160	WIG TSV TDF RDATA MCOOL HIC GTF BW BROADPEAK BEDPE BEDGRAPH BED	Marco Gallo	Jul 05, 2024
GSE193238	A primed immune transcriptional programme is activated in oligodendroglia in multiple sclerosis [ATAC-Seq and RNA-Seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	WIG TSV TBI RDS H5 BEDPE	Eneritz Agirre	Jan 28, 2022
GSE193240	A primed immune transcriptional programme is activated in oligodendroglia in multiple sclerosis [ATAC-Seq and RNA-Seq II]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	WIG TSV TBI RDS H5 BEDPE BED	Eneritz Agirre	Jan 28, 2022
GSE236182	Kdm1a safeguards the topological boundaries of PRC2-repressed genes and prevents aging-related euchromatinization in neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	37	WIG TXT HIC BW BIGWIG BEDPE BEDGRAPH	Sergio Niñerola	Dec 04, 2023
GSE246125	3D genome topology distinguishes molecular subgroups of medulloblastoma	Expression profiling by high throughput sequencing Other	Homo sapiens	55	WIG TSV HIC BW BEDPE BEDGRAPH	Marco Gallo	Sep 29, 2024
GSE62742	Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	249	TXT NARROWPEAK BIGWIG BEDPE SRA Run Selector	Fabian Grubert	Aug 20, 2015
GSE72164	Dynamic reorganization of extremely long-range promoter-promoter interactions between two states of pluripotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	76	TXT BW BEDPE BEDGRAPH SRA Run Selector	Shuang-Yin Wang	Dec 07, 2015
GSE86189	A compendium of promoter-centered long-range chromatin interactions in diverse human tissues and cell types	Other	Homo sapiens	249	TXT FPKM_TRACKING BEDPE SRA Run Selector	Inkyung Jung	Jul 31, 2019