GEO Browser - GEO

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83 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			BROADPEAK
GSE249655	Enhancing transcription replication conflict targets ecDNA positive cancers [KAS-seq]	Other	Homo sapiens	16	BROADPEAK BW	Guiping Wang	May 23, 2024
GSE265888	Dynamic Chromatin Boundaries of TCR Loci Coincide V(D)J recombination During T Cell Development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	79	BED BEDGRAPH BEDPE BROADPEAK BW CSV HIC MATRIX TXT	Hao bingtao	Apr 27, 2024
GSE235947	p53 rapidly restructures 3D chromatin organization to trigger a transcriptional response	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	54	BROADPEAK BW IBED NARROWPEAK TXT	Biola M Javierre	Apr 17, 2024
GSE262006	Temporal constraints on enhancer usage shape the regulation of limb gene transcription	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	123	BROADPEAK BW H5 TXT	Guillaume Andrey	Mar 22, 2024
GSE214264	3D genome structures of single differentiating mouse ES cells reveal a unique reorganisation of chromatin in the formative state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	101	BROADPEAK BW CSV NARROWPEAK NCC TSV TXT	David Lando	Jan 19, 2024
GSE241439	XIST directly regulates X-linked and autosomal genes in naïve human pluripotent cells [RAP-seq_human]	Other	Homo sapiens	15	BEDGRAPH BROADPEAK	Kathrin Plath	Dec 15, 2023
GSE241440	XIST directly regulates X-linked and autosomal genes in naïve human pluripotent cells [RAP-seq_mouse]	Other	Mus musculus	11	BEDGRAPH BROADPEAK	Kathrin Plath	Dec 15, 2023
GSE241444	XIST directly regulates X-linked and autosomal genes in naïve human pluripotent cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	129	BEDGRAPH BROADPEAK	Kathrin Plath	Dec 13, 2023
GSE232915	IL-15-DEPENDENT IMMUNE CROSS-TALK BETWEEN NK CELLS AND DENDRITIC CELLS IN HIV-1 ELITE CONTROLLERS [CUT&RUN]	Other	Homo sapiens	144	BROADPEAK	Ce Gao	Dec 06, 2023
GSE232916	IL-15-DEPENDENT IMMUNE CROSS-TALK BETWEEN NK CELLS AND DENDRITIC CELLS IN HIV-1 ELITE CONTROLLERS	Expression profiling by high throughput sequencing Other	Homo sapiens	169	BROADPEAK	Ce Gao	Dec 05, 2023
GSE248980	Chromatin context-dependent effects of epigenetic drugs on CRISPR-Cas9 editing	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	40	BROADPEAK BW NARROWPEAK TXT	Ruben Schep	Nov 30, 2023
GSE247469	SIRT1 prevents R-loops during chronological aging by modulating DNA replication at rDNA loci	Other	Homo sapiens	33	BROADPEAK BW	Christophe E Redon	Nov 27, 2023
GSE227928	Selective gene expression maintains human tRNA anticodon pools during differentiation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Homo sapiens	97	BEDGRAPH BROADPEAK NARROWPEAK	Danny Nedialkova	Oct 22, 2023
GSE158897	Cohesin-mediated chromatin folding dynamics and transcriptional interactions	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	118	BEDGRAPH BROADPEAK HIC NARROWPEAK TXT SRA Run Selector	Yijun Ruan	Sep 30, 2023
GSE217349	Rewiring of the promoter-enhancer interactome and regulatory landscape in glioblastoma orchestrates gene expression underlying the neurogliomal synaptic communication	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	159	BED BROADPEAK TXT	Silvia Remeseiro	Sep 12, 2023
GSE241450	Pharmacologic inhibition of BAF chromatin remodeling complexes as a therapeutic approach to transcription factor-dependent cancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	119	BROADPEAK BW NARROWPEAK TAB VCF	Salih Topal	Sep 11, 2023
GSE221053	Transposable elements as lineage-specific enhancers in endodermal-lineage cancers	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	30	BROADPEAK BW HIC NARROWPEAK TXT	Konsta Karttunen	Aug 11, 2023
GSE220701	Matrix stiffness regulate fibrotic phenotype through AP-1 contributing to chromatin accessibility dynamic [Cut&Tag]	Other	Homo sapiens	14	BIGWIG BROADPEAK NARROWPEAK	Wenxue Zhao	May 01, 2023
GSE220703	Matrix stiffness modulates fibrogenesis in hepatic stellate cells through AP-1-induced chromatin priming	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	38	BIGWIG BROADPEAK NARROWPEAK	Wenxue Zhao	May 01, 2023
GSE205915	HIV-1 integration in microglia	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	49	BED BROADPEAK BW NARROWPEAK TAB	Carl Herrmann	Feb 20, 2023