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21 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome variation profiling by high throughput sequencing			BW
GSE222193	Transient loss of Polycomb components induces an epigenetic cancer fate	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Drosophila melanogaster	126	BROADPEAK BW NARROWPEAK TXT VCF	Vincent Loubiere	Feb 28, 2024
GSE230455	Investigating the role of telomere length in 3D spatiotemporal gene regulation in cardiomyocytes [CUT&Tag]	Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	BW	Bin Li	Dec 31, 2023
GSE209662	Recruitment of ETS1 to activated accessible regions promotes cilia genes transcriptional program in ciliopathy	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens	31	BW VCF	Yun-Miao Guo	Jul 28, 2022
GSE164906	"Stripe" transcription factors provide accessibility to co-binding partners in mammalian genomes.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis Genome variation profiling by high throughput sequencing	Mus musculus	476	BW TAB VCF	Yongbing Zhao	Jul 21, 2022
GSE189078	EBF1 contributes to the balance of lympho-myeloid fate in haematopoietic progenitors via B-lymphoid priming and Cebpa antagonism	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	32	BW H5	Aurelie Lenaerts	Jun 30, 2022
GSE145921	Genomic and transcriptomic analysis of medulloblastoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	33	BED BW CSV TXT SRA Run Selector	Zaili Luo	Dec 31, 2021
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus Rattus norvegicus Sus scrofa	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE138798	Discrete Adaptive Responses to MEK Inhibitor In Subpopulations of Triple-Negative Breast Cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens	110	BW TXT	Daniel Robert Goulet	Nov 09, 2021
GSE180164	A regulatory phosphosite on Mec1 controls RNAPII and RNAPIII occupancy during replication stress [copy_number]	Genome variation profiling by high throughput sequencing	Saccharomyces cerevisiae	4	BW SRA Run Selector	romain forey	Sep 08, 2021
GSE180167	A regulatory phosphosite on Mec1 controls RNAPII and RNAPIII occupancy during replication stress	Other Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BW TXT	romain forey	Sep 08, 2021
GSE165877	Pathway conversion enables a double-lock mechanism to maintain DNA methylation and genome stability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Arabidopsis thaliana	42	BW TDF TSV WIG SRA Run Selector	Cheng Zhao	Aug 11, 2021
GSE159324	Targeted nanopore sequencing for the identification of ABCB1 promoter translocations in relapsed acute myeloid leukemia [Nanopore]	Genome variation profiling by high throughput sequencing	Homo sapiens	29	BW SRA Run Selector	Tim C Somervaille	Oct 22, 2020
GSE159331	Targeted nanopore sequencing for the identification of ABCB1 promoter translocations in relapsed acute myeloid leukemia [Targeted Resequencing]	Genome variation profiling by high throughput sequencing	Homo sapiens	1	BW SRA Run Selector	Tim C Somervaille	Oct 22, 2020
GSE159512	Targeted nanopore sequencing for the identification of ABCB1 promoter translocations in relapsed acute myeloid leukemia	Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	53	BW	Tim C Somervaille	Oct 22, 2020
GSE131366	Distinct Contribution of DNA Methylation and Histone Acetylation to the Genomic Occupancy of Transcription Factors	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	126	BW TXT SRA Run Selector	Skirmantas Kriaucionis	Aug 06, 2020
GSE130270	Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	149	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	Sep 25, 2019
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE108450	The histone variant H2A.Z and chromatin remodeler BRAHMA act coordinately and antagonistically to regulate transcription and nucleosome dynamics in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Arabidopsis thaliana	33	BED BW TXT XLS SRA Run Selector	Roger B Deal	Jan 05, 2018
GSE38674	Genomic DNA in Normal and Cancerous Prostate Cells	Genome variation profiling by high throughput sequencing	Homo sapiens	2	BW SRA Run Selector	Aaron Statham	Nov 30, 2012
GSE41729	Transcriptional silencing of transposable elements by Piwi and its impact on chromatin and gene expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	32	BED BW SRA Run Selector	Grzegorz Sienski	Nov 26, 2012