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Accession Title Series type(s) Organism(s) Samples GDS Supplementary Contact Release date
Remove filtersFilter Remove filterEscherichia coli str. K-12 substr. MG1655 Remove filterCSV
GSE241319
Bacterial Stress Bodies – Ancestral Condensates Regulating RNA Turnover and Protein Translation II
  • Link icon Escherichia coli str. K-12 substr. MG1655
56
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Lydia Freddolino Apr 01, 2024
GSE241321
Bacterial Stress Bodies – Ancestral Condensates Regulating RNA Turnover and Protein Translation III
  • Link icon Escherichia coli str. K-12 substr. MG1655
42
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Lydia Freddolino Apr 01, 2024
GSE249682
SOS Genes Are Rapidly Induced While Mutagenesis Is Temporally Regulated by Changes in Protein Activation and Nucleotide Pools After a Sub-lethal Dose of Ciprofloxacin in Escherichia coli
  • Link icon Escherichia coli str. K-12 substr. MG1655
42
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Amanda Holstad Singleton Mar 26, 2024
GSE213624
Genome-wide promoter responses to CRISPR perturbations of regulators reveal regulatory networks in Escherichia coli
  • Link icon Escherichia coli str. K-12 substr. MG1655
112
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Yichao Han Sep 01, 2023
GSE211360
A three-colour biosensor reveals multimodal stress response at the single cell level and the spatiotemporal dynamics of biofilms.
  • Link icon Escherichia coli str. K-12 substr. MG1655
10
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Kersten Rabe May 29, 2023
GSE225096
Assessing the effects of four two-component system response regulator knockouts in E. coli
  • Link icon Escherichia coli str. K-12 substr. MG1655
30
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Cameron Lamoureux Feb 12, 2023
GSE224989
Adaptive laboratory evolution with heterologous pgi
  • Link icon Escherichia coli str. K-12 substr. MG1655
16
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Cameron Lamoureux Feb 09, 2023
GSE224889
Adaptive laboratory evolution of chorismate synthase knockouts
  • Link icon Escherichia coli str. K-12 substr. MG1655
22
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Cameron Lamoureux Feb 08, 2023
GSE222248
The E. coli pathobiont LF82 encodes a unique variant of sigma 70 that results in global gene expression changes and altered phenotypes
  • Link icon Escherichia coli str. K-12 substr. MG1655
12
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Melissa Arroyo-Mendoza Jan 10, 2023
GSE54902
Elucidating transcriptional regulation of nitrogen metabolism with systems approaches [ChIP-Seq]
  • Link icon Escherichia coli str. K-12 substr. MG1655
32 Donghyuk Kim Jan 05, 2023
GSE54904
Elucidating transcriptional regulation of nitrogen metabolism with systems approaches [RNA-Seq]
24 Donghyuk Kim Jan 05, 2023
GSE221706
Assessing the effects of transcription factor knockouts on growth in high-density fed-batch cultures
122
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Cameron Lamoureux Dec 30, 2022
GSE221314
Lab evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance
  • Link icon Escherichia coli str. K-12 substr. MG1655
84
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Kevin Rychel Dec 19, 2022
GSE194037
Alteration of DNA supercoiling serves as a trigger of short-term cold shock repressed genes of E. coli
  • Link icon Escherichia coli str. K-12 substr. MG1655
15
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Andre Ribeiro Jul 20, 2022
GSE206047
Transcriptional Response to Inducers for E. coli and B. subtilis
1344 Joshua Urrutia Jun 16, 2022
GSE179913
A target expression threshold dictates invader defense and autoimmunity by CRISPR-Cas13 [Genome wide screen]
  • Link icon Escherichia coli str. K-12 substr. MG1655
4 Chase Beisel Jun 08, 2022
GSE179914
A target expression threshold dictates invader defense and autoimmunity by CRISPR-Cas13 [RNA-seq]
  • Link icon Escherichia coli str. K-12 substr. MG1655
4 Chase Beisel Jun 08, 2022
GSE178278
The transcription factor network of E. coli steers global responses to shifts in RNAP concentration
  • Link icon Escherichia coli str. K-12 substr. MG1655
12 Andre Sanches Ribeiro Jun 07, 2022
GSE178279
The transcription factor network of E. coli steers global responses to shifts in RNAP concentration
  • Link icon Escherichia coli str. K-12 substr. MG1655
12 Andre Sanches Ribeiro Jun 07, 2022
GSE197447
The transcription factor network of E. coli steers global responses to shifts in RNAP concentration
  • Link icon Escherichia coli str. K-12 substr. MG1655
12
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Andre Sanches Ribeiro Jun 07, 2022