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364 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			HIC
GSE223058	TFIIIC and MYCN link the three-dimensional chromatin structure of promoters to transcription termination of stalled RNA polymerase	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	62	BEDGRAPH BEDPE HIC	Martin Eilers	Jul 15, 2024
GSE186599	TULIPs decorate the three-dimensional genome of PFA ependymoma	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	160	BED BEDGRAPH BEDPE BROADPEAK BW GTF HIC MCOOL RDATA TDF TSV WIG	Marco Gallo	Jul 05, 2024
GSE253634	Chromatin conformation and histone modification profiling across human kidney anatomic regions	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	24	HIC	Benjamin Humphreys	Jun 20, 2024
GSE209715	Chromatin structure and gene expression signatures in FUS low and high expressed hematopoietic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	44	BED BW HIC TXT	Jianwei Wang	Jun 06, 2024
GSE232887	A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BED BW COOL HIC NARROWPEAK	Marco Osterwalder	Jun 01, 2024
GSE247620	Histone methyltransferase SETDB1 silenced SINE B2 retrotransposons and maintained mitotic cell cycle of neural progenitor cells	Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	22	COV HIC NARROWPEAK	Yan Jiang	Jun 01, 2024
GSE211456	Enhanced Phase Separation Mediated Oncogenicity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	26	BW HIC	kuang junqi	May 24, 2024
GSE193484	Super-silencer perturbation by EZH2 and REST inhibition leads to large loss of chromatin interactions and reduction in cancer growth [HiChIP]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1	BED HIC SRA Run Selector	KAIJING CHEN	May 08, 2024
GSE193489	Super-silencer perturbation by EZH2 and REST inhibition leads to large loss of chromatin interactions and reduction in cancer growth	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	101	BED HIC TAB TSV TXT	KAIJING CHEN	May 08, 2024
GSE214692	Dissecting developmental disorders caused by CTCF mutation at R567	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	71	BW CSV HIC MTX NARROWPEAK TSV	gongcheng Hu	May 05, 2024
GSE215181	Selective requirement of 3D genomic organization for the Mdm1-Il22-Ifng locus regulation in initial Th1 cell lineage specification and differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	135	BW H5 HIC TXT	Vijay Nagarajan	May 01, 2024
GSE222686	Clonal evolution of the 3D chromatin landscape of relapsed ALL [H3K27ac HiChIP]	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	HIC	Sonali Narang	May 01, 2024
GSE222687	Clonal evolution of the 3D chromatin landscape of relapsed ALL	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	74	BED BEDGRAPH BW HIC	Sonali Narang	May 01, 2024
GSE265888	Dynamic Chromatin Boundaries of TCR Loci Coincide V(D)J recombination During T Cell Development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	79	BED BEDGRAPH BEDPE BROADPEAK BW CSV HIC MATRIX TXT	Hao bingtao	Apr 27, 2024
GSE247536	Integrated Enhancer Regulatory Network by Enhancer-Promoter Looping in Gastric Cancer (HiChIP)	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	3	HIC	Masaki Fukuyo	Apr 22, 2024
GSE247539	Integrated Enhancer Regulatory Network by Enhancer-Promoter Looping in Gastric Cancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	52	BEDGRAPH BIGWIG HIC	Masaki Fukuyo	Apr 22, 2024
GSE226499	Epigenetic evolution of the Ly49 gene family [Hi-C]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	HIC	Changxu Fan	Apr 20, 2024
GSE226502	Epigenetic evolution of the Ly49 gene family	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	65	BEDGRAPH BW CSV FA HIC TXT	Changxu Fan	Apr 20, 2024
GSE237465	Nuclear RNA homeostasis promotes systems-level coordination of cell fate and senescence	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	139	BW HIC TXT	Xue Han	Apr 16, 2024
GSE186411	Hnrnpk is essential for embryonic limb bud development as a transcription activator and insulator collaborator	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	34	BW HIC TXT SRA Run Selector	Yuyu Chen	Apr 15, 2024